Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGACGAATCGAATCGAGTCCGAGACGCCGATCTCGGATTCGAGACCGTTGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatgaacgatgggatgggatgggatcccgctgaggatgcttttttttttctgttttgtttgtgctcgatctggattcgggttggtccggcttggc...

Basic information

species Oryza sativa
transcript LOC_Os02g05330.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88743061|gb|CI766569.1|CI766569
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|88728620|gb|CI752130.1|CI752130
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|29642250|gb|CB647257.1|CB647257
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|88744367|gb|CI767727.1|CI767727
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|29666181|gb|CB662456.1|CB662456
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|88360157|gb|CI610271.1|CI610271
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGGTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|88733584|gb|CI756761.1|CI756761
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|33685122|gb|CF313361.1|CF313361
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|29642449|gb|CB647456.1|CB647456
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|86894710|gb|CI308357.1|CI308357
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58672128|gb|CK060814.1|CK060814
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|55410405|gb|CV722781.1|CV722781
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|86900697|gb|CI302114.1|CI302114
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGAT
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGAT
EST: gi|88402741|gb|CI613189.1|CI613189
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGTTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58607105|gb|CK035138.1|CK035138
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|33655674|gb|CF278288.1|CF278288
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|570170|gb|D41019.1|D41019
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGNTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58673254|gb|CK061940.1|CK061940
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|29666180|gb|CB662455.1|CB662455
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58693161|gb|CK081848.1|CK081848
EST:     CGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: CGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|88732327|gb|CI755504.1|CI755504
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58692381|gb|CK081068.1|CK081068
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|88738783|gb|CI762291.1|CI762291
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58600294|gb|CK010822.1|CK010822
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58609408|gb|CK037441.1|CK037441
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAGGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58668040|gb|CK056726.1|CK056726
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58685951|gb|CK074638.1|CK074638
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58661671|gb|CK050351.1|CK050351
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAGGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|33685610|gb|CF313849.1|CF313849
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|86900744|gb|CI302161.1|CI302161
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|88724974|gb|CI748233.1|CI748233
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58689524|gb|CK078211.1|CK078211
EST:     GATTTCAACCAACACAAGCCCTCCTCNCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: GATTTCAACCAACACAAGCCCTCCTC-CGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|86884303|gb|CI311706.1|CI311706
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58685755|gb|CK074442.1|CK074442
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCGTAAGCACTAT
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGC-TAAGCACTAT
EST: gi|58696214|gb|CK084901.1|CK084901
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|29644972|gb|CB649979.1|CB649979
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58602353|gb|CK012881.1|CK012881
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|33653523|gb|CF276137.1|CF276137
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|88395055|gb|CI609371.1|CI609371
EST:     TGATTTCAACCAAAACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|86888514|gb|CI303796.1|CI303796
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTNAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|58660136|gb|CK048816.1|CK048816
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
EST: gi|88761507|gb|CI771063.1|CI771063
EST:     TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAG                         CCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG
genomic: TGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 73 (downstream exon)
Score: 33

CCCGACGAATCGAATCGAGTCCGAGACGCCGATCTCGGATTCGAGACCGTTGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatga ... ttgaatacagCCATGGCAGGAATGGCACCCGAAGGCTCCCAGTTTGATGCTAAGCACTATGACAGCAAGATGCAGGAACTACT




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCGACGAATCGAATCGAGTCCGAGACGCCGATCTCGGATTCGAGACCGTTGATTTCAACCAACACAAGCCCTCCTCCGGATCGATCCGCTCCTCTTCAGgtaacaatgaacgatgggatgggatgggatcccgctgaggatgcttttttttttctgttttgtttgtgctcgatctggattcgggttggtccggcttggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatggg