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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGAGGCTGCTCGGCCACGGCCAGTTCGGCTACACCTTCGCCGCCACCGACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaatactattactactggactttgacgcttggtctgtgtgattcgctgcggtttcgcgggaattcgggagttccatttcggattgagctagtg...

Basic information

species Oryza sativa
transcript LOC_Os02g03410.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g03410.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G053868_T02 (Zea mays), 5'ss of exon 1
CGGGAGGCTGCTCGGCCACGGCCAGTTCGGCTACACCTTCGCCGCCACCGACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaatactattactactggactttga-----cgcttggtctgtgtgattcgctgcggtttcgcgggaattcgggagttccatttcggattgagctagtg
|||  | ||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||| |||||||||||||||||||||||||||||    ||    |     |  | | ||    |     |||   |||  |||   |  ||    |       | | | |   ||     ||| ||  | |      
CGGCCGCCTGCTCGGCCACGGCCAGTTCGGCTACACCTTCGCCGCCACCGACCGCGGCTCTGGGGACCGCGTTGCCGTCAAGCGCATCGACAAGGCCAAGgtga-gctgccgcctgcccccccgcaccccaagccgccgcgctgtccctgtctctgtctctcctactagtagtagtagctggtggtgattccgagcgcgtc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29641793|gb|CB646800.1|CB646800
EST:     ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG                         ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: gi|88341932|gb|CI644269.1|CI644269
EST:     ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG                         ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: gi|88342437|gb|CI645959.1|CI645959
EST:     ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG                         ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: gi|58590583|gb|CF988891.1|CF988891
EST:     ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG                         ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: gi|29644214|gb|CB649221.1|CB649221
EST:     ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG                         ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: gi|218492077|gb|FG943382.1|FG943382
EST:     ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG                         ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: gi|29657420|gb|CB653695.1|CB653695
EST:     ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG                         ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: gi|88330524|gb|CI635146.1|CI635146
EST:     ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG                         ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: gi|88310411|gb|CI659201.1|CI659201
EST:     ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG                         ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: gi|88407152|gb|CI581239.1|CI581239
EST:     ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG                         ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: gi|88334162|gb|CI641213.1|CI641213
EST:     ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG                         ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT