Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGTACAAGTACAGCGGCGTCGACCACTCGCTCGTCGCCAAGTACATCCTCCAGCCCTTCTGGTCACGATTCGTCAACCTCTTCCCGCTCTGGTTCCCgtaagcgccgcgccccctcgaatttctttcctttccttttcttttcttccattccaccagtgttttgatccgtgccttgtcaagctcctggctttcgcca...

Basic information

species Oryza sativa
transcript LOC_Os02g02750.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02750.4 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G466281_T02 (Zea mays), 5'ss of exon 1
GGAGGTACAAGTACAGCGGCGTCGACCACTCGCTCGTCGCCAAGTACATCCTCCAGCCCTTCTGGTCACGATTCGTCAACCTCTTCCCGCTCTGGTTCCCgtaagcgccgcgccccctcgaatttctttcctttccttttcttttcttccattccaccagtgtt-----ttgatccgtgccttgt-caagctcctggctttcgcca
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||  |   | | | ||   |||   ||| ||  |||  ||  | |   |||  | ||| |     |||     ||| |  | | |||   ||| ||||    
GGCGCTACAAGTACAGCGGCGTCGACCACTCGCTCGTCGCCAAGTACATCCTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCgtaagccgcctcctctcccg---ttcccccctctctctttggttattgcttctccgtccgtgctctccgttgccaaatgcgtcttgcgagcgattggttttcc---

upper sequence: LOC_Os02g02750.4 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ38380 (Selaginella moellendorffii), 5'ss of exon 2
GGAGGTACAAGTACAGCGGCGTCGACCACTCGCTCGTCGCCAAGTACATCCTCCAGCCCTTCTGGTCACGATTCGTCAACCTCTTCCCGCTCTGGTTCCCgtaagcgccgcgccccctcgaatttctttcctttccttttcttttcttccattccaccagtgttttgatccgtgccttgtcaagctcctggctttcgcca
  || || |||||||||||||| ||| | ||   | | ||||||||| |  |||||||||||||||| ||||| |||||| | ||||| |||||| | |||| ||     | | |  |   |    ||           | |||| |||  ||   |   | |||||  | |                            
ACAGATATAAGTACAGCGGCGTGGACAAATCTTACATGGCCAAGTACGTGTTCCAGCCCTTCTGGTCGCGATTTGTCAACTTGTTCCCACTCTGGATGCCgtgagtttttctcgctttgttaacctttctagagaaacgttttttattcttttgtccttttattttgcacag----------------------------

upper sequence: LOC_Os02g02750.4 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ14843 (Selaginella moellendorffii), 5'ss of exon 2
GGAGGTACAAGTACAGCGGCGTCGACCACTCGCTCGTCGCCAAGTACATCCTCCAGCCCTTCTGGTCACGATTCGTCAACCTCTTCCCGCTCTGGTTCCCgtaagcgccgcgccccctcgaatttctttcctttccttttcttttcttccattccaccagtgttttgatccgtgccttgtcaagctcctggctttcgcca
  || || |||||||||||||| ||| | ||   | | ||||||||| |  |||||||||||||||| ||||| |||||| | ||||| |||||| | |||| ||     | | |  |   |    ||           | |||| |||  ||   |   | |||||  | |                            
ACAGATATAAGTACAGCGGCGTGGACAAATCTTACATGGCCAAGTACGTGTTCCAGCCCTTCTGGTCGCGATTTGTCAACTTGTTCCCACTCTGGATGCCgtgagtttttctcgctttgttaacctttctagagaagagttttttattctgttgtccttcttttttgcacag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11172065|gb|AU164099.1|AU164099
EST:     CTCCAGCCCTTCTGGTCACGATTCGTCAACCTCTTCCCGCTCTGGTTCCC                         GCCAAATATG
genomic: CTCCAGCCCTTCTGGTCACGATTCGTCAACCTCTTCCCGCTCTGGTTCCCgtaagcgccg ... tcgaccgcagGCCAAATATG
EST: gi|29646388|gb|CB651395.1|CB651395
EST:     CTCCAGCCCTTCTGGTCACGATTCGTCAACCTCTTCCCGCTCTGGTTCCC                         GCCAAATATG
genomic: CTCCAGCCCTTCTGGTCACGATTCGTCAACCTCTTCCCGCTCTGGTTCCCgtaagcgccg ... tcgaccgcagGCCAAATATG