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GTCTCATCAGATCAGCGTGAAGCAGCGGCAAGAACACAAAAATGGCGGACGAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatattagtctcttaattctgaattaattcctcatctgatcgctcaagtttgatctgctgatcgattttgggttttgaatcaaatcattgcatgcgtgcag
species | Oryza sativa |
transcript | LOC_Os02g02560.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGT-CGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88401596|gb|CI588537.1|CI588537
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88417942|gb|CI596619.1|CI596619
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88371009|gb|CI595121.1|CI595121
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88294742|gb|CI604614.1|CI604614
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88377046|gb|CI597830.1|CI597830
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGGCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88426949|gb|CI601910.1|CI601910
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88433235|gb|CI591675.1|CI591675
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGTGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCTGCTACCTCAGEST: gi|88415469|gb|CI589061.1|CI589061
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|3090613|gb|C93600.1|C93600
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88391611|gb|CI600800.1|CI600800
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88433205|gb|CI591645.1|CI591645
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCTGCTACCTCAGEST: gi|88389523|gb|CI600692.1|CI600692
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88387609|gb|CI585312.1|CI585312
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88314463|gb|CI604947.1|CI604947
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGCTCGCCCGCTACCTCAGEST: gi|88314385|gb|CI604869.1|CI604869
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCG-TCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88300805|gb|CI589797.1|CI589797
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|66922584|gb|CX109432.1|CX109432
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88434257|gb|CI589322.1|CI589322
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: AGAAGCTCGCCAAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88433214|gb|CI591654.1|CI591654
genomic: AGAAGCTCGCC-AAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: AGAAGCTCGCCAAGCTTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88389649|gb|CI603148.1|CI603148
genomic: AGAAGCTCGCCAAGC-TGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAACTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88370364|gb|CI587754.1|CI587754
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGEST: gi|88405310|gb|CI586131.1|CI586131
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
EST: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAG TGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
genomic: GAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatat ... atgcgtgcagTGACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCATCAGATCAGCGTGAAGCAGCGGCAAGAACACAAAAATGGCGGACGAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGgtaattatattagtctcttaattctgaattaattcctcatctgatcgctcaagtttgatctgctgatcgattttgggttttgaatcaaatcattgcatgcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA