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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAAACTAAACACAGCCTTTCTTGTGAACCTTTAGAGAGATCATGTCTGTGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTTgtaagtaaacctctgaggcctccattttccttcaagttgctacttgttaatcatagcttggcatttaataggtatttttaattggtaataatggtttgca...

Basic information

species Oryza sativa
transcript LOC_Os02g02040.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117230883|gb|CT842191.1|CT842191
EST:     TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTT                         AGCATAGCAATCAGATGGGGTCAATCTGATGGTTTTTCCCCATTCTCCAGC
genomic: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTTgtaagtaaac ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC
EST: gi|88311583|gb|CI574800.1|CI574800
EST:     TGTCGTAGGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTT                         AGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCC-ATTCTCCAGC
genomic: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTTgtaagtaaac ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC
EST: gi|88430269|gb|CI567288.1|CI567288
EST:     TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTT                         AGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCC-ATTCTCCAGC
genomic: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTTgtaagtaaac ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC
EST: gi|88356168|gb|CI627616.1|CI627616
EST:     TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTT                         AGCATAGCAATCAGATAGGTTCAATCTGATGGTTTTTCC
genomic: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTTgtaagtaaac ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCC
EST: gi|88377283|gb|CI600438.1|CI600438
EST:     TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTT                         AGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC
genomic: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTTgtaagtaaac ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC