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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTCCTTGCTTCAGATCTGCACGGAGACGAAGACCATCCTCTCTGTCGACGACATCCTCGCCCTCATTGGCGATCGCTGCGATGGTGTCATCGGCCAGgcaagcaaagcaattgcaatccaataattttgattgatttcttcttgttgataacaaattaagtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g01150.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682997|gb|CB679272.1|CB679272
EST:     ACGACGTCCTCGCCCTCATTGGCGATCGCTGCGATGGTGTCATCGGCCAG                         CTGACGGAGGAGTGGGGAGAGGTGCTGTTCTCGGCGCTGAAGCGCGCCGGC
genomic: ACGACATCCTCGCCCTCATTGGCGATCGCTGCGATGGTGTCATCGGCCAGgcaagcaaag ... ttaagtgcagCTGACGGAGGAGTGGGGAGAGGTGCTGTTCTCGGCGCTGAAGCGCGCCGGC
EST: gi|88388887|gb|CI592775.1|CI592775
EST:     ACGACATCCTCGCCCTCATTGGCGATCGCTGCGATGGTGTCATCGGCCAG                         CTGACGGAGGAGTGGGGAGAGGTGCTGTTCTCGGCGCTGAAGCGCGCCGGC
genomic: ACGACATCCTCGCCCTCATTGGCGATCGCTGCGATGGTGTCATCGGCCAGgcaagcaaag ... ttaagtgcagCTGACGGAGGAGTGGGGAGAGGTGCTGTTCTCGGCGCTGAAGCGCGCCGGC
EST: gi|33683103|gb|CF311342.1|CF311342
EST:     ACGACATCCTCGCCCTCATTGGCGATCGCTGCGATGGTGTCATCGGCCAG                         CTGACGGAGGAGTGGGGAAG-GGTGCTG-TCTCGGCGCTGAAGCGCGCCGG
genomic: ACGACATCCTCGCCCTCATTGGCGATCGCTGCGATGGTGTCATCGGCCAGgcaagcaaag ... ttaagtgcagCTGACGGAGGAGTGGGG-AGAGGTGCTGTTCTCGGCGCTGAAGCGCGCCGG