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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTTCCGGAACATCAACTCCTCCTCCTCCTCCAGCTGGATGTGCCACGCCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttccttaccctgcgcgttacctacctacttgtacaaattacccgcatcttactcatgccactcctgcaagtctaaactgcaagatgcctgtttgt...

Basic information

species Oryza sativa
transcript LOC_Os01g74650.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88411746|gb|CI571238.1|CI571238
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88667688|gb|CI722427.1|CI722427
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCCAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|87008745|gb|CI302900.1|CI302900
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATC
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATC
EST: gi|88371581|gb|CI602759.1|CI602759
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAAGATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88717925|gb|CI739437.1|CI739437
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88676538|gb|CI730651.1|CI730651
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88400288|gb|CI590978.1|CI590978
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88300958|gb|CI592138.1|CI592138
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88430337|gb|CI567356.1|CI567356
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88334877|gb|CI648652.1|CI648652
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88406017|gb|CI591412.1|CI591412
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88675865|gb|CI729437.1|CI729437
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGAT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGAT
EST: gi|88594440|gb|CI714398.1|CI714398
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88406356|gb|CI596483.1|CI596483
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88341126|gb|CI638682.1|CI638682
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88425870|gb|CI571770.1|CI571770
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88360653|gb|CI647663.1|CI647663
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|8857408|gb|AU094726.1|AU094726
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88324363|gb|CI566176.1|CI566176
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88352009|gb|CI626009.1|CI626009
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGAGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88668133|gb|CI722872.1|CI722872
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88745270|gb|CI768630.1|CI768630
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTAT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTAT
EST: gi|86900701|gb|CI302118.1|CI302118
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGT
EST: gi|88364611|gb|CI612426.1|CI612426
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|86829529|gb|CI286728.1|CI286728
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|58675236|gb|CK063923.1|CK063923
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88973516|gb|CI717944.1|CI717944
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCG
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCG
EST: gi|88668026|gb|CI722765.1|CI722765
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88414857|gb|CI604215.1|CI604215
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGC-GACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88410128|gb|CI573367.1|CI573367
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|89171833|gb|CI720892.1|CI720892
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88362754|gb|CI608903.1|CI608903
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCA-GGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88356249|gb|CI627697.1|CI627697
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGTCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|58608600|gb|CK036633.1|CK036633
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88377536|gb|CI603021.1|CI603021
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88385698|gb|CI566560.1|CI566560
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88351571|gb|CI628791.1|CI628791
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGG
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGG
EST: gi|88424191|gb|CI581746.1|CI581746
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88672948|gb|CI727063.1|CI727063
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|428742|gb|D24896.1|D24896
EST:     GCGTCGCCGCCGAGGTCGAGGGCCTNAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTTCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88406117|gb|CI593897.1|CI593897
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88346170|gb|CI634043.1|CI634043
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88363163|gb|CI616320.1|CI616320
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|13806171|gb|AU181396.1|AU181396
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88731692|gb|CI755305.1|CI755305
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTC
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTC
EST: gi|88972250|gb|CI716991.1|CI716991
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCA
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCA
EST: gi|89171839|gb|CI720898.1|CI720898
EST:     CGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCC-GACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88762012|gb|CI771568.1|CI771568
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88389409|gb|CI600578.1|CI600578
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88406989|gb|CI578517.1|CI578517
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88719082|gb|CI742592.1|CI742592
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88430584|gb|CI569607.1|CI569607
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTCTATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88718588|gb|CI742098.1|CI742098
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88383913|gb|CI631803.1|CI631803
EST:     CCGTCGCCGCCGAGGTCGAGGGCTTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCG
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCG
EST: gi|88389582|gb|CI603081.1|CI603081
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|33678770|gb|CF307009.1|CF307009
EST:     GTCGCCGCTCGTAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: GTCGCCGC-CG-AGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88387162|gb|CI577948.1|CI577948
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88724525|gb|CI747784.1|CI747784
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88378367|gb|CI580518.1|CI580518
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88417074|gb|CI573789.1|CI573789
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88674374|gb|CI728487.1|CI728487
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88668508|gb|CI722070.1|CI722070
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88431199|gb|CI574370.1|CI574370
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88404752|gb|CI583559.1|CI583559
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88430623|gb|CI569646.1|CI569646
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88320100|gb|CI640497.1|CI640497
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88403644|gb|CI575528.1|CI575528
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88411818|gb|CI571310.1|CI571310
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88388057|gb|CI590333.1|CI590333
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88354203|gb|CI637769.1|CI637769
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88674339|gb|CI728452.1|CI728452
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
EST: gi|88665717|gb|CI715873.1|CI715873
EST:     CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAG                         CTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT
genomic: CCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 108

TCCCTTCCGGAACATCAACTCCTCCTCCTCCTCCAGCTGGATGTGCCACGCCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttcct ... ctgattgcagCTCATCGGCAAGACTCCAATGGTATATCTCAACAACATCGTCAAGGGATGTGTTGCCAATGTCGCTGCTAAGCTCGAGATTATGGAGCCCTGTTGCAGTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCCTTCCGGAACATCAACTCCTCCTCCTCCTCCAGCTGGATGTGCCACGCCGTCGCCGCCGAGGTCGAGGGCCTCAACATCGCCGACGACGTCACCCAGgcaatttccttaccctgcgcgttacctacctacttgtacaaattacccgcatcttactcatgccactcctgcaagtctaaactgcaagatgcctgtttgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactcc