Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86855099|gb|CI263166.1|CI263166EST: TGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATG CACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGG
genomic: TGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGgtacttacca ... gtgggtgcagCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGG
EST:
gi|30228764|gb|CB966654.1|CB966654EST: TGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATG CACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGG
genomic: TGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGgtacttacca ... gtgggtgcagCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGG
EST:
gi|30226671|gb|CB964563.1|CB964563EST: TGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATG CACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGG
genomic: TGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGgtacttacca ... gtgggtgcagCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGG
EST:
gi|86889743|gb|CI299941.1|CI299941EST: TGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATG CACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGG
genomic: TGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGgtacttacca ... gtgggtgcagCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGG
EST:
gi|88997933|gb|CI037818.1|CI037818EST: AGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATG CACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGG
genomic: AGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGgtacttacca ... gtgggtgcagCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGgtacttaccattttcaactaaagatcgatcctaagtgcatccatgaattgtacatgttggtgtgcttttgatgcatgcatcccaatgtcagtttcttaacttgtgatttgatgatgcgtgtgtgggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA