1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCGAGGTGGCCGTGCCCGCCGATCCGGCCGGCGATGGCGATCGAGATAAAATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTCgtaaggagcagcttatcttatgaatttaccatgcgaagcctcgcaaactactactgttcattggcatctttggttaattgtttttggccttcgtgagctag
species | Oryza sativa |
transcript | LOC_Os01g71720.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTC TGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGGEST: gi|58611354|gb|CK039066.1|CK039066
genomic: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTCgtaaggagca ... cgtgagctagTGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGG
EST: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTC TGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGGEST: gi|87005427|gb|CI285649.1|CI285649
genomic: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTCgtaaggagca ... cgtgagctagTGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGG
EST: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTC TGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGGEST: gi|95101464|gb|CI693214.1|CI693214
genomic: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTCgtaaggagca ... cgtgagctagTGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGG
EST: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTC TGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGGEST: gi|58607097|gb|CK035130.1|CK035130
genomic: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTCgtaaggagca ... cgtgagctagTGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGG
EST: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTC TGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGGEST: gi|88435278|gb|CI581998.1|CI581998
genomic: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTCgtaaggagca ... cgtgagctagTGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGG
EST: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTC TGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGGEST: gi|88586201|gb|CI703891.1|CI703891
genomic: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTCgtaaggagca ... cgtgagctagTGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGG
EST: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTC TGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGGEST: gi|88425197|gb|CI564714.1|CI564714
genomic: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTCgtaaggagca ... cgtgagctagTGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGG
EST: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTC TGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGGEST: gi|88421312|gb|CI569157.1|CI569157
genomic: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTCgtaaggagca ... cgtgagctagTGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGG
EST: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTC TGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGG
genomic: ATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTCgtaaggagca ... cgtgagctagTGTTCTCTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGATGGCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGAGGTGGCCGTGCCCGCCGATCCGGCCGGCGATGGCGATCGAGATAAAATTCGGCTGCGGCAGCTCGGCTACAAGCAAGAGCTGAAGCGCGGCCTCTCgtaaggagcagcttatcttatgaatttaccatgcgaagcctcgcaaactactactgttcattggcatctttggttaattgtttttggccttcgtgagctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC