1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCCGTCGGCACGCTCGTCAAGAACCGCCGCCGCCGCTTCCGGATGGTACCCGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGCAAGATCCAGgtacgtacctgctctcttcaattccatcggcgtcgccggcgatcgcctatctccctctccatcttaccttctactatcccttttcatattaaagtaattc...
species | Oryza sativa |
transcript | LOC_Os01g71240.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGAACTCGACAAGCGCTCGCAGGCCGGGACCCAGCGCCGAAAGATC-AG GAGAAGCTTCGTGTTGCACTCTTCGTCCAGAAAGCTGGACTTEST: gi|88300713|gb|CI589705.1|CI589705
genomic: CCGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGCAAGATCCAGgtacgtacct ... tattccacagGAGAAGCTTCGTGTTGCACTCTTCGTTCAGAAAGCTGCACTT
EST: CCGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGGGCCGGAAGATCCAG GAGAAGCTTCGEST: gi|88391158|gb|CI595412.1|CI595412
genomic: CCGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGCAAGATCCAGgtacgtacct ... tattccacagGAGAAGCTTCG
EST: CGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGCCAAGATCCAG GAGAAGCTTCGTGTTGCACTCTTCGTTCAGAEST: gi|87021444|gb|CI274051.1|CI274051
genomic: CGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGC-AAGATCCAGgtacgtacct ... tattccacagGAGAAGCTTCGTGTTGCACTCTTCGTTCAGA
EST: CCGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGCAAGATCCAG GAGAAGCTTCGTGTTGCACTCTTCGTTCAGAAAGCTGCACTTCAGTTCATCEST: gi|88427006|gb|CI601967.1|CI601967
genomic: CCGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGCAAGATCCAGgtacgtacct ... tattccacagGAGAAGCTTCGTGTTGCACTCTTCGTTCAGAAAGCTGCACTTCAGTTCATC
EST: CGACCTCGAAAAGCGCTCGCAGGCCGAGACCCAGCGCCCGCAAGATCCAG GAGAAGCTTCGTGTTGCACTCTTCGTTCAGAAAGCTGCACTTCAGTTCATCEST: gi|88443640|gb|CI591865.1|CI591865
genomic: CGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCC-GCAAGATCCAGgtacgtacct ... tattccacagGAGAAGCTTCGTGTTGCACTCTTCGTTCAGAAAGCTGCACTTCAGTTCATC
EST: CCGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGCAAGATCCAG GAGAAGCTTCGTGTTGCACTCTTCGTTCAGAAAGCTGCACTTCAGTTCATCEST: gi|88312542|gb|CI585065.1|CI585065
genomic: CCGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGCAAGATCCAGgtacgtacct ... tattccacagGAGAAGCTTCGTGTTGCACTCTTCGTTCAGAAAGCTGCACTTCAGTTCATC
EST: CCGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGCAAGATCCAG GAGAAGCTTCGTG
genomic: CCGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGCAAGATCCAGgtacgtacct ... tattccacagGAGAAGCTTCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCGTCGGCACGCTCGTCAAGAACCGCCGCCGCCGCTTCCGGATGGTACCCGACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGCAAGATCCAGgtacgtacctgctctcttcaattccatcggcgtcgccggcgatcgcctatctccctctccatcttaccttctactatcccttttcatattaaagtaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cggcgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc