1 5' 3' | 2 5' 3' | 3 5' 3' |
TGGGTCTTGGCCATTGCCATTCTTGCTGCTGCTGTATGCTTCTTCCTTGGAGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcctttgtttttcttgtgttattctcttcttggttttgatcttgatggatacattcttgtcagttagtagaactcaacccaagctgcttattt...
species | Oryza sativa |
transcript | LOC_Os01g70200.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCTEST: gi|88765645|gb|CI774739.1|CI774739
genomic: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcc ... acaaatgcagGAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCT
EST: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCTEST: gi|88411261|gb|CI564382.1|CI564382
genomic: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcc ... acaaatgcagGAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCT
EST: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCTEST: gi|66920634|gb|CX107482.1|CX107482
genomic: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcc ... acaaatgcagGAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCT
EST: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCTEST: gi|117229672|gb|CT846639.1|CT846639
genomic: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcc ... acaaatgcagGAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCT
EST: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCTEST: gi|88433751|gb|CI582073.1|CI582073
genomic: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcc ... acaaatgcagGAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCT
EST: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCTEST: gi|88443564|gb|CI597031.1|CI597031
genomic: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcc ... acaaatgcagGAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCT
EST: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCTEST: gi|58683817|gb|CK072504.1|CK072504
genomic: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcc ... acaaatgcagGAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCT
EST: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCTEST: gi|58688390|gb|CK077077.1|CK077077
genomic: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcc ... acaaatgcagGAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCT
EST: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCTEST: gi|88348820|gb|CI631514.1|CI631514
genomic: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcc ... acaaatgcagGAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCT
EST: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGEST: gi|88361287|gb|CI626391.1|CI626391
genomic: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcc ... acaaatgcagGAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGG
EST: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCTEST: gi|88345538|gb|CI629799.1|CI629799
genomic: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcc ... acaaatgcagGAAGTGCTGGTGATGTGTTGGAAGATGACCCTGTTGGGAGGCTTAAGGTCT
EST: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGTGCTGGTGATGTGTTGGAAGATGACCCTG
genomic: AGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcc ... acaaatgcagGAAGTGCTGGTGATGTGTTGGAAGATGACCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGTCTTGGCCATTGCCATTCTTGCTGCTGCTGTATGCTTCTTCCTTGGAGCTCAGGCCCAGGAGGTGCGGCAGGGCCACCAGACAGAGAGGATCTCAGgtggggggcctttgtttttcttgtgttattctcttcttggttttgatcttgatggatacattcttgtcagttagtagaactcaacccaagctgcttattt
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcaaccc