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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCGCGCGCGCGCGCACGCACCGAGACGTACCGTACCGGCGACATGAATCCCTACGACCTCCGCTACGCCGACCCTTCCTCCTACCGCGACAGGCGCAGgtacgctaaccctaaccctaaccctagcttagctcacggctcgatgtggatctgcgttgagatgggactgaatcgattggtttggttgttccgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g68320.4
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g68320.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G362850_T01 (Zea mays), 5'ss of exon 2
-CCTCGCGCGCGCGCGCACGCACCGAGACGTACCGTACCGGCGACATGAATCCCTACGACCTCCGCTACGCCGACCCTTCCTCCTACCGCGACAGGCGCAGgtacgctaaccctaaccctaaccctagcttagctcacggctcgatgtggatctgcgttgagatgggactgaatcgattggtttggttgttccgtgcag
 |||||| |  || |   ||  | |  | |  ||  ||||||| |||||| || || || ||||||| ||| ||||| || ||||||| |||||||||||||||||  ||||||||  ||| | ||         | ||    ||| || ||  |              |||  |||| | ||||  |    | || ||
CCCTCGC-CCTGCTCTGTCGGCCGGCCAAGCTCCTCACCGGCGCCATGAACCCGTATGATCTCCGCTTCGCTGACCCCTCATCCTACCACGACAGGCGCAGgtacggcaaccctaattctagctct---------cccgatctgatttgaattcg----------aaggtgacccgatcgatttgagttccgcatgtag