Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAACCCTAACTATTCCTTCTCCCACCTCTCCCCTCTCCTCGCTCCTCCACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcctcacactccatcctctcaacctccttgcagccctgctagaatcggtcgctgcgtgctgtgctgtttcgttcttgattcgctgcgtcgcggt...

Basic information

species Oryza sativa
transcript LOC_Os01g67134.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58658098|gb|CK046778.1|CK046778
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACTACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88718553|gb|CI742063.1|CI742063
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGAACCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88315543|gb|CI615415.1|CI615415
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGG-TTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCA
EST: gi|58604817|gb|CK015345.1|CK015345
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGG-TTGTCAAGACCCAGAAGACCAATGCCTACTACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33689831|gb|CF318070.1|CF318070
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|11863316|gb|AU065822.2|AU065822
EST:     CACGCGCCGCCGCCGCCGCAGCGNAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88406602|gb|CI599095.1|CI599095
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88388750|gb|CI592638.1|CI592638
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88731096|gb|CI754709.1|CI754709
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33654169|gb|CF276783.1|CF276783
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88316468|gb|CI621707.1|CI621707
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88362740|gb|CI608889.1|CI608889
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|29657555|gb|CB653830.1|CB653830
EST:     CCGCCGCCGCCGCAGCGCTTGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CCGCCGCCGCCGCAGCG-GAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88352341|gb|CI615595.1|CI615595
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|55408323|gb|CV720699.1|CV720699
EST:     GCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: GCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88317346|gb|CI627995.1|CI627995
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88726027|gb|CI749682.1|CI749682
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33820922|gb|CF336266.1|CF336266
EST:     CACGTGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33693282|gb|CF321521.1|CF321521
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88718895|gb|CI742405.1|CI742405
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88760193|gb|CI769749.1|CI769749
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88762360|gb|CI771916.1|CI771916
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|11026266|gb|AU162867.1|AU162867
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|55409447|gb|CV721823.1|CV721823
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|11565253|gb|AU165889.1|AU165889
EST:     ACGCGCCGCCGCCGCCGCAGCGAAGCAAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: ACGCGCCGCCGCCGCCGCAGCGGAGC-AGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33689690|gb|CF317929.1|CF317929
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88716726|gb|CI740236.1|CI740236
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|29687293|gb|CB683568.1|CB683568
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33664208|gb|CF295175.1|CF295175
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|86831851|gb|CI303291.1|CI303291
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88693462|gb|CI737037.1|CI737037
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGAACAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|32948464|gb|BP185036.1|BP185036
EST:     GCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: GCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33690075|gb|CF318314.1|CF318314
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33823119|gb|CF337362.1|CF337362
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88726436|gb|CI750091.1|CI750091
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|32948110|gb|BP184682.1|BP184682
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|117251436|gb|CT844165.1|CT844165
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACTACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33810868|gb|CF331325.1|CF331325
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|86905628|gb|CI287193.1|CI287193
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88356667|gb|CI617750.1|CI617750
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33688829|gb|CF317068.1|CF317068
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|86830607|gb|CI292049.1|CI292049
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|86596791|gb|CI286704.1|CI286704
EST:     ACGCGCCGCCGCCG-CGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGG-TTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: ACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88761552|gb|CI771108.1|CI771108
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|58602021|gb|CK012549.1|CK012549
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACTACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|58599223|gb|CK009751.1|CK009751
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACTACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88745455|gb|CI768815.1|CI768815
EST:     CACGCGCCGCCGCAGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33823697|gb|CF337654.1|CF337654
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33690461|gb|CF318700.1|CF318700
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|163917751|gb|EG711285.1|EG711285
EST:     AGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACTACAAGCGTTTCCAA
genomic: AGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88385545|gb|CI564205.1|CI564205
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88393713|gb|CI621208.1|CI621208
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGGGAGCGAGATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|58591763|gb|CF990071.1|CF990071
EST:     CACGCG-CG-CGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGG-TTGTCAAGACCCAGAAGACCAATGCCTACTACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88731290|gb|CI754903.1|CI754903
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|58593862|gb|CF992170.1|CF992170
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTGGTGGGGACCCAGAAGACCAATGCCTACTACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|38568588|gb|CD670803.1|CD670803
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88360056|gb|CI610170.1|CI610170
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33664336|gb|CF295303.1|CF295303
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88736162|gb|CI759670.1|CI759670
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88393147|gb|CI616631.1|CI616631
EST:     GCGCCGCCGCCCGCCCGCAGCGGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCAAAAGCGTTTCCAA
genomic: GCGCCGCCG-CCG-CCGCAGC-GGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|87023897|gb|CI288250.1|CI288250
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88736065|gb|CI759573.1|CI759573
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|4878238|gb|AU062537.1|AU062537
EST:     GCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTNAAGACCCAGAAGACCAATGCCTACCACAAGCNTTTCCAA
genomic: GCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88739370|gb|CI762878.1|CI762878
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88729308|gb|CI752818.1|CI752818
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|11025899|gb|AU162500.1|AU162500
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88726414|gb|CI750069.1|CI750069
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGGTTTTGTCAAGAACCAGAAGAACAATGCCTACCACAAGCGTTTCC
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGA-GGG-TTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCC
EST: gi|87006113|gb|CI291309.1|CI291309
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|88734369|gb|CI757877.1|CI757877
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|58660855|gb|CK049535.1|CK049535
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGG-TTGTCAAGACCCAGAAGACCAATGCCTACTACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA
EST: gi|33693846|gb|CF322085.1|CF322085
EST:     CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATG                         GGAGGGTTTGTCAAGACCCAGAAGGCCAATGCCTACCACAAGCGTTTCCAA
genomic: CACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 73 (downstream exon)
Score: 22

ATAAACCCTAACTATTCCTTCTCCCACCTCTCCCCTCTCCTCGCTCCTCCACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcct ... gtctctccagGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAAACCCTAACTATTCCTTCTCCCACCTCTCCCCTCTCCTCGCTCCTCCACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgtaagatcctcacactccatcctctcaacctccttgcagccctgctagaatcggtcgctgcgtgctgtgctgtttcgttcttgattcgctgcgtcgcggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcgtcg