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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGCACTACCTCTGCCGCCGCTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataatcctcctcctccatcctcccaatcatcaccaccatcaacgccgtcgtgaattgattgattgatttggtttgatttgttggtgttgtgtag

Basic information

species Oryza sativa
transcript LOC_Os01g66120.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G014653_T03 (Zea mays), 5'ss of exon 1
GTGATGCACTACCTCTGCCGCCGCTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgata-atcctcctcctccatcctcc--caatcatcaccaccatcaac-----------gccgtcgtga-attgattgattgatt--tggtttgatttgttggtgttgtgtag
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  |||||     || |||||   | || | |  ||    |  |  || | |||           || | |||||   ||      | ||   | | ||| |   |   ||| ||| ||
GTGATGCACTACCTCTGCCGCCGCTGCGCCGGCCTGCCCATCGCCGTCCCCATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccgtcgtcctcggtcttcttgcagcagcagtagcagccgtgaaccaatttcctgtgcggccgtgacgatggcgagctaatcgatcgattgctaactctctgt-gtgcag

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA06G11970.1 (Glycine max), 5'ss of exon 1
GTGATGCACTACCTCTGCCGCCGCTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataatcctcctcctccatcctcccaatcatcaccaccatcaacgccgtcgtgaattgattgattgatttggtttgatttgttggtgttgtgtag
||| ||||||| |||||||||   |||||    |  || |||||||| |||||||||||||| |||||||||||||| | ||| || ||| |  | ||| |||  |||||| |  || | ||| |   || || ||     | | |         |  ||| ||| |||| |   || | | ||    |          
GTGTTGCACTATCTCTGCCGCAAATGCGCGTCGCAGCCAATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACTTACCCGgtaacataatcat--tcattcattcattcattcttcgatttc-tgattcttaatttttatttattaattgttactgtgttactttacag----------

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA04G42800.1 (Glycine max), 5'ss of exon 1
GTGATGCACTACCTCTGCCGCCGCTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataatcctcctcctccatcctcccaatcatcaccaccatcaacgccgtcgtgaattgattgattgatttggtttgatttgttggtgttgtgtag
||| ||||||| ||||||||    |||||    |  || |||||||| |||||||||||||| |||||||||||||| | ||| || ||| | || ||| |||  || ||| ||       | | ||  |   ||    |   | ||  |         || ||| ||| ||||  ||||| ||||   | ||||  ||
GTGTTGCACTATCTCTGCCGTAAATGCGCATCGCAGCCTATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACCTACCCGgtaacattatcttc-------aacttctgatatattcttattcttaattc---------ttaattcattcattt--tttgaattgt---tattgtacag

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv07s0031g02610.t01 (Vitis vinifera), 5'ss of exon 1
GTGATGCACTACCTCTGCCGCCGCTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgat----aatcctcctcctccatcctcccaatcatcaccaccatcaacgccgtcgtgaattgattgattgatttgg-tttgatttgttggtgttgtgtag
||| |||| || ||    ||    |||||    |    |||| |||| || || || |||||| | || |||||||||| ||||||||||||||||||  |||   |    | ||    | |||  || |    |   |    | | | ||    |        |||||   ||||| |  || ||||   ||   | |     
GTGGTGCATTATCTGGTTCGTAAATGCGCATCACAGAGCATCTCCGTTCCGATTATTGCCGAGGTTGATCTCTACAAGTACGATCCATGGCAGCTTCCAGgtattttttttattctcttttctctttctttttcagatttggaaaccttaagtgtgagaaatcctgatttgatgattcgaattcgattctctgaaatggg----

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv18s0001g02300.t01 (Vitis vinifera), 5'ss of exon 1
GTGATGCACTACCTCTGCCGCCGCTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataatcctcctcctccatcctcccaatcatcaccaccatcaacgccgtcgtgaattgattgattgatttggtttgatttgttggtgttgtgtag
||||||||||| || |||||    || ||    |   | |||||||| || ||||| ||||| || || |||||||| |||||||| |||||||||||  |||  || ||  |  |  ||  |  |     |  | |      ||    |   |   | |||  |  ||  ||  |   |||||| || | |||   ||
GTGATGCACTATCTGTGCCGTAAATGTGCATCGCAATCGATCGCCGTGCCGATCATTGCCGAAATTGATCTCTACAAATTCGATCCCTGGCAGCTTCCTGgta--attattattattttcattttt-----ttgttatttttttctgaactcccaaaatttggatttttatttaagggggatttggtgat-ttgaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88329813|gb|CI651482.1|CI651482
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|38481707|gb|CF965789.1|CF965789
EST:     CATCATCGGCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88569599|gb|CI660774.1|CI660774
EST:     CATCATCGCCGAGATCGACCTCTACAAGTCCGATCCATGGCAGCTTCCCC                         GGATGGNGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|38480683|gb|CF964772.1|CF964772
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88740444|gb|CI763952.1|CI763952
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88587486|gb|CI705236.1|CI705236
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58587522|gb|CF985830.1|CF985830
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58592005|gb|CF990313.1|CF990313
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58587430|gb|CF985738.1|CF985738
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|86888894|gb|CI307952.1|CI307952
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88582692|gb|CI700119.1|CI700119
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88383879|gb|CI631769.1|CI631769
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGNCGAGAC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCG-CGAGAC
EST: gi|42793913|gb|AB117812.1|AB117812
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88404957|gb|CI685393.1|CI685393
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88346225|gb|CI634098.1|CI634098
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88361851|gb|CI682016.1|CI682016
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58587420|gb|CF985728.1|CF985728
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58586623|gb|CF984931.1|CF984931
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGAAC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58594315|gb|CF992623.1|CF992623
EST:     TCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: TCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|218483357|gb|FG967161.1|FG967161
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88827164|gb|CI777729.1|CI777729
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58595213|gb|CF993521.1|CF993521
EST:     CATCATCGCCGAGATCGAGCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58586196|gb|CF984504.1|CF984504
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58587590|gb|CF985898.1|CF985898
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88570117|gb|CI661292.1|CI661292
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGNGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88317626|gb|CI672208.1|CI672208
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|87012451|gb|CI307199.1|CI307199
EST:     CATCATCGCCNAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCG
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCG
EST: gi|58605511|gb|CK033544.1|CK033544
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88390387|gb|CI607423.1|CI607423
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58586597|gb|CF984905.1|CF984905
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58589527|gb|CF987835.1|CF987835
EST:     ATCATCGCCGAGATCGACCTCGTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: ATCATCGCCGAGATCGACCTC-TACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88326600|gb|CI658316.1|CI658316
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGNGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|2310622|gb|C26777.1|C26777
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTNGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88424053|gb|CI689753.1|CI689753
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88360228|gb|CI610342.1|CI610342
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88300122|gb|CI582356.1|CI582356
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88765469|gb|CI774563.1|CI774563
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88745301|gb|CI768661.1|CI768661
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58591560|gb|CF989868.1|CF989868
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGAATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGAC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGA-TGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGAC
EST: gi|15008325|gb|AU222713.1|AU222713
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58591045|gb|CF989353.1|CF989353
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88579418|gb|CI688402.1|CI688402
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAG
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAG
EST: gi|58589373|gb|CF987681.1|CF987681
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88575983|gb|CI670128.1|CI670128
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58586737|gb|CF985045.1|CF985045
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58589510|gb|CF987818.1|CF987818
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|4715304|gb|AU056421.1|AU056421
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58593932|gb|CF992240.1|CF992240
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|5038715|gb|AU070825.1|AU070825
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88306031|gb|CI635033.1|CI635033
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|88358756|gb|CI649305.1|CI649305
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
EST: gi|58591240|gb|CF989548.1|CF989548
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCC                         GGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 72 (downstream exon)
Score: 39

GTGATGCACTACCTCTGCCGCCGCTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataat ... tgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACCGCAAGTACCCGAACGGGTCGCGGCCGAACCGCGCCGCCGGGTCGGGGTA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGATGCACTACCTCTGCCGCCGCTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGATCGACCTCTACAAGTTCGATCCATGGCAGCTTCCCCgtacgataatcctcctcctccatcctcccaatcatcaccaccatcaacgccgtcgtgaattgattgattgatttggtttgatttgttggtgttgtgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT