1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGGGACGAGGAGGGCGGCGGCGGCGCCGTGGAGCTCAACGTCGTTGAGGAGGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGGgtgagtagctttcctctccttttatttttctttgtcttttctttttgggttttcttggaaaaacatttcccccgatggaaaatattattttattattttg...
species | Oryza sativa |
transcript | LOC_Os01g65600.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGG GATGGAGTGGTCAEST: gi|58666751|gb|CK055437.1|CK055437
genomic: GGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGGgtgagtagct ... ttggttgcagGATGGAGTGGTCA
EST: GGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGG GATGGAGTGGTCACCCGGTCTGTGGGAAGCGGTACCATTTCATCATCGAGAEST: gi|58674427|gb|CK063113.1|CK063113
genomic: GGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGGgtgagtagct ... ttggttgcagGATGGAGTGGTCACCCGGTCTGTGGGAAGCGGTACCATTTCATCATCGAGA
EST: GGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGG GATGGAGTGGTCACCCGGTCTGTGGGAAGCGGTACCATTTCATCATCGAGA
genomic: GGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGGgtgagtagct ... ttggttgcagGATGGAGTGGTCACCCGGTCTGTGGGAAGCGGTACCATTTCATCATCGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGACGAGGAGGGCGGCGGCGGCGCCGTGGAGCTCAACGTCGTTGAGGAGGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGGgtgagtagctttcctctccttttatttttctttgtcttttctttttgggttttcttggaaaaacatttcccccgatggaaaatattattttattattttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccga