1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTGCTCGCGATTCCTGGAGTCGGGCCGCGCAACCTGAGGAAGCTCGTGGACAAGGGATTCGATGGCGTGGCACAGCTCAAGCAGCTGTACAGGGATAAGgtgtgtgtgtgtgtgaactgtgaaatattagcttgtactccttcagatcgataatacttatcgttttcaacaagagcacggtctctaggaaacaatcata...
species | Oryza sativa |
transcript | LOC_Os01g65350.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAAGGGATTCGATGGCGTGGCACAGCTCAAGCAGCTGTACAGGGATAAG TTCTTTGGCAAATCCCATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTTEST: gi|29686229|gb|CB682504.1|CB682504
genomic: ACAAGGGATTCGATGGCGTGGCACAGCTCAAGCAGCTGTACAGGGATAAGgtgtgtgtgt ... gtttttgcagTTCTTTGGCAAGTCCAATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTT
EST: ACAGGGATAAG TTCTTTGGCAAGTCCAATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTT
genomic: ACAGGGATAAGgtgtgtgtgt ... gtttttgcagTTCTTTGGCAAGTCCAATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCTCGCGATTCCTGGAGTCGGGCCGCGCAACCTGAGGAAGCTCGTGGACAAGGGATTCGATGGCGTGGCACAGCTCAAGCAGCTGTACAGGGATAAGgtgtgtgtgtgtgtgaactgtgaaatattagcttgtactccttcagatcgataatacttatcgttttcaacaagagcacggtctctaggaaacaatcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG