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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGATGCCAGGGAGTTGCCATGGGATGGCGTGCCGAACTTGGCACGGTTGCCGTCGCAGAAATCCGGGATGGGTGTGGCGAAAGCCAGCGCCGCCAAGgcaagtggtctgctcgtgctcttcgtactcccttcttcccgttgaatttgggcgcaatgcggcttaaaatcatcatatgccatttcatttgttcgaaaaa...

Basic information

species Oryza sativa
transcript LOC_Os01g65330.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65330.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G148773_T02 (Zea mays), 5'ss of exon 1
------------CATTGATGCCAGGGAGTTGCCATGGGATGGCGTGCCGAACTTGGCACGGTTGCCGTCGCAGAAATCCGGGATGGGTGTGGCGAAAGCCAGCGCCGCCAAGgcaagtggtctgctcgtgctct-tcgtactcccttcttcccgttgaatttgggcgcaatgcggcttaaaatcatcatatgccatttcatttgttcgaaaaa
            |   ||| |||  |     ||||||||||| || ||     ||||||||||||| |||| ||| || |||||||||||||||||             |||||||||  ||    | | || | | | | |          |  |   ||    | |  |       || |   |  | |    ||   |  ||        
GCCTGGAGCTTCCGCAGATACCACTGCAGCACCATGGGATGGGGTACCACCACTGGCACGGTTGCCATCGCTGAAGTCGGGGATGGGTGTGGCGAA------------TAAGgcaagttttcaatacttactttgttgcattattgctgaatcaatcgtttctttccccgtctactaaaagactgtttttttttgttatctcagtgtatttt-

upper sequence: LOC_Os01g65330.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G046846_T01 (Zea mays), 5'ss of exon 2
------------CATTGATGCCAGGGAGTTGCCATGGGATGGCGTGCCGAACTTGGCACGGTTGCCGTCGCAGAAATCCGGGATGGGTGTGGCGAAAGCCAGCGCCGCCAAGgcaagtggtctgctcgtgctctt-cgtactcccttcttcccgttgaatttgggcgcaatgcggcttaaaatcatcatatgccatttcatttgttcgaaaaa
            |   |||  ||  |     ||||||||||| |||||     ||||||||||||| || ||||| || |||||||||||||||||             |||||||||  || |  | | || |   | | |          |  | | ||   ||    | | | | |||| |   ||      ||  ||  ||   |    
GCCTGGAGCTACCGCGGATAACACTGCAGCACCATGGGATGGGGTGCCACCACTGGCACGGTTGCCATCTCAGAAGTCGGGGATGGGTGTGGCGAA------------TAAGgcaagttttcagtacttactttaatgcattattgctgaatcaatcatttcttgcctcgt-ctgttaaaaaactgaattgttttttatatcagtgtaatttg