Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCACGCTCAACACCGGAGCACGCATCCCCTCGGTGGGCCTCGGCACCTACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGgtcggtctctctgaacacttgctgtttacttgtacgcccgtatccatatgcatatattgttctaagtttacttgctgagttgctgtggcag

Basic information

species Oryza sativa
transcript LOC_Os01g62880.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88443619|gb|CI591844.1|CI591844
EST:     ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAG                         GCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
genomic: ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGgtcggtctct ... gctgtggcagGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
EST: gi|88357926|gb|CI650662.1|CI650662
EST:     ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAG                         GCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
genomic: ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGgtcggtctct ... gctgtggcagGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
EST: gi|88363085|gb|CI616242.1|CI616242
EST:     ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAG                         GCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
genomic: ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGgtcggtctct ... gctgtggcagGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
EST: gi|88357168|gb|CI616055.1|CI616055
EST:     ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAG                         GCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
genomic: ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGgtcggtctct ... gctgtggcagGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
EST: gi|33823226|gb|CF337413.1|CF337413
EST:     ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAG                         GCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
genomic: ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGgtcggtctct ... gctgtggcagGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
EST: gi|88361380|gb|CI626484.1|CI626484
EST:     ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAG                         GCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
genomic: ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGgtcggtctct ... gctgtggcagGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
EST: gi|86888764|gb|CI307822.1|CI307822
EST:     ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAG                         GCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
genomic: ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGgtcggtctct ... gctgtggcagGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
EST: gi|9865212|gb|AU100962.1|AU100962
EST:     ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAG                         GAAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG
genomic: ACAAGGCCGGCACCGGCGTCGTCGCCGACGTGGTCTCCGCCGCCGTCAAGgtcggtctct ... gctgtggcagGCAGGGTACCGGCACATAGACTGCGCGCCGCTGTACAAGAACGAGCAGGAG