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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTGGCCTGGGGGTCTCGCGAGCTGCACTTATTGTGACTGAAAGTGTGGTCGGCTCTTTGCTGGTTGGTGTGGGCTTGGGTCGCGGAGAGAGTAAAGgtgcgtgtgtgttcgccgcgagggtgcgattcttcctacgcgcttgccatttttggggggattttatggcgtgttcattttgtgcgattttggtgatttgtggtgtag

Basic information

species Oryza sativa
transcript LOC_Os01g62650.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88696476|gb|CI740051.1|CI740051
EST:     GGTCGGCTCTTNGCTGGTTGGTGTGGGCTTGGGTCGCGGAGAGAGTAAAG                         GGTTTGTGGCATGATCAGCGCTAGCGCCGNGGCGATGCGTG
genomic: GGTCGGCTCTTTGCTGGTTGGTGTGGGCTTGGGTCGCGGAGAGAGTAAAGgtgcgtgtgt ... tgtggtgtagGGTTTGTGGCATGATCAGCGCTAGCGCTGTGGCGATGCGTG
EST: gi|88390740|gb|CI610966.1|CI610966
EST:     GGTCGGCTCTTTGCTGGTTGGTGTGGGCTTGGGTCGCGGAGAGAGTAAAG                         GGTTTGTGGCATGATCAGCGCTAGCGCTGTGGCGATGCGTGGGGAGATGGG
genomic: GGTCGGCTCTTTGCTGGTTGGTGTGGGCTTGGGTCGCGGAGAGAGTAAAGgtgcgtgtgt ... tgtggtgtagGGTTTGTGGCATGATCAGCGCTAGCGCTGTGGCGATGCGTGGGGAGATGGG
EST: gi|88731068|gb|CI754681.1|CI754681
EST:     GGTCGGCTCTTTGCTGGTTGGTGTGGGCTTGGGTCGCGGAGAGAGTAAAG                         GGTTTGTGGCATGATCAGCGCTAGCGCTGTGGCGATGCGTGGGGAGATGGG
genomic: GGTCGGCTCTTTGCTGGTTGGTGTGGGCTTGGGTCGCGGAGAGAGTAAAGgtgcgtgtgt ... tgtggtgtagGGTTTGTGGCATGATCAGCGCTAGCGCTGTGGCGATGCGTGGGGAGATGGG
EST: gi|88411220|gb|CI564341.1|CI564341
EST:     GGTCGGCTCTTTGCTGGTTGGTGTGGGCTTGGGTCGCGGAGAGAGTAAAG                         GGTCTGTGGCATGATCAGCGCTAGCGCTGTGGCGATGCGTGGGGAGATGGG
genomic: GGTCGGCTCTTTGCTGGTTGGTGTGGGCTTGGGTCGCGGAGAGAGTAAAGgtgcgtgtgt ... tgtggtgtagGGTTTGTGGCATGATCAGCGCTAGCGCTGTGGCGATGCGTGGGGAGATGGG
EST: gi|88693679|gb|CI737254.1|CI737254
EST:     GGTCGGCTCTTTGCTGGTTGGTGTGGGCTTGGGTCGCGGAGAGAGTAAAG                         GGTTTGTGGCATGATCAGCGCTAGC
genomic: GGTCGGCTCTTTGCTGGTTGGTGTGGGCTTGGGTCGCGGAGAGAGTAAAGgtgcgtgtgt ... tgtggtgtagGGTTTGTGGCATGATCAGCGCTAGC
EST: gi|88298774|gb|CI565971.1|CI565971
EST:     GGTCGGCTCTTTGCTGGTTGGTGTGGGCTTGGGTCGCGGACAGAGTAAAG                         GGTTTGTGGCATGATCAGCGCCTAGCGCTGTGGCGATGCGTGGGGAGATGG
genomic: GGTCGGCTCTTTGCTGGTTGGTGTGGGCTTGGGTCGCGGAGAGAGTAAAGgtgcgtgtgt ... tgtggtgtagGGTTTGTGGCATGATCAGCGC-TAGCGCTGTGGCGATGCGTGGGGAGATGG