1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCCACGAAAACCCTCTGCCTCCTTCGCTCGCTGCACCCTCGTCTCGGCGATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattccccccagcactagtcgtctcacaatccagattccggatgagccggagacgctgctgatgagtgatgaggcttgggttttatcgatgcgct...
species | Oryza sativa |
transcript | LOC_Os01g62420.5 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC AGGTGGTGGTGAGCCCGCCGTTCGTGTTCCTGCCGCAGGTGAAGGGTTTGCEST: gi|33691626|gb|CF319865.1|CF319865
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ttgggtgcagAGGTGGTGGTGAGCCCGCCGTTCGTGTTCCTGCCGCAGGTGAAGGGTTTGC
EST: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC AGGTGGTGGTGAGCCCGCCGTTCGTGTTCCTGCCGCAGGTGAAGGGTTTGC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ttgggtgcagAGGTGGTGGTGAGCCCGCCGTTCGTGTTCCTGCCGCAGGTGAAGGGTTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCACGAAAACCCTCTGCCTCCTTCGCTCGCTGCACCCTCGTCTCGGCGATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattccccccagcactagtcgtctcacaatccagattccggatgagccggagacgctgctgatgagtgatgaggcttgggttttatcgatgcgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccccc
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