1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTAGAAGCAGGGGGAGGGACGGTGGGCGGTGGCTTGGGAGGGAGGCAGGGGCGGGGCGGCTCGAGTTAGGTTTCTTGGCGGCTTCAGTTGGGCGAGGAAGgtgagcggctttcggtggttggttgctttgaggtgaaagctctctcgccttttctcactgtaaaaaacggcatctttcttttggggttttgcgttgcgtc...
species | Oryza sativa |
transcript | LOC_Os01g61720.8 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TAGGTTTCTTGGCGGCTTCAGTTGGGCGAGGAAG GCTTTAGCTGAAGACACAATAAAGGAACACCNNNNNNNTGGGTAAGAAAGGEST: gi|58679071|gb|CK067758.1|CK067758
genomic: TAGGTTTCTTGGCGGCTTCAGTTGGGCGAGGAAGgtgagcggct ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG
EST: GGCGGCTTCAGTTGGGCGAGGAAG GCTTTAGCTGAAGACACAATAAAGGAACACCAAGAAAATGGGTAAGAAAGG
genomic: GGCGGCTTCAGTTGGGCGAGGAAGgtgagcggct ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGAAGCAGGGGGAGGGACGGTGGGCGGTGGCTTGGGAGGGAGGCAGGGGCGGGGCGGCTCGAGTTAGGTTTCTTGGCGGCTTCAGTTGGGCGAGGAAGgtgagcggctttcggtggttggttgctttgaggtgaaagctctctcgccttttctcactgtaaaaaacggcatctttcttttggggttttgcgttgcgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa