1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCGTTGCGTCCCCCGGTTTTGGCGTTCTTCCTGGCTGCGCGCTTTCCGTGGCTCCGCTCCAGgtgaatccagggttaatttcgctgcgcatttgtgatgggatttggccgcaggtggcgagggtttgtttcgggggtgggggattttgtcagtctgggttgg...
species | Oryza sativa |
transcript | LOC_Os01g61720.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGCTTTCCGTGGCTCCGCTCCAG GCTTTAGCTGAAGACACAATAAAGGAACACCNNNNNNNTGGGTAAGAAAGGEST: gi|58683800|gb|CK072487.1|CK072487
genomic: GCGCTTTCCGTGGCTCCGCTCCAGgtgaatccag ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG
EST: GCTTTCCGTGGCTCCGCTCCAG GCTTTAGCTGAAGACACAATAAAGGAACACCAAAAGAATGGGTAAGAAAGGEST: gi|88415132|gb|CI583955.1|CI583955
genomic: GCTTTCCGTGGCTCCGCTCCAGgtgaatccag ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG
EST: TTTTGGCGTTCTTCCTGGCTGCGCGCTTTCCGTGGCTCCGCTCCAG GCTTTAGCTGAAGACACAATAAAGGAACACCNNNNNNNTGGGTAAGAAAGG
genomic: TTTTGGCGTTCTTCCTGGCTGCGCGCTTTCCGTGGCTCCGCTCCAGgtgaatccag ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTTGCGTCCCCCGGTTTTGGCGTTCTTCCTGGCTGCGCGCTTTCCGTGGCTCCGCTCCAGgtgaatccagggttaatttcgctgcgcatttgtgatgggatttggccgcaggtggcgagggtttgtttcgggggtgggggattttgtcagtctgggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggg