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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGGAGGGAGGCAGGGGCGGGGCGGCTCGAGTTAGGTTTCTTGGCGGCTTCAGTTGGGCGAGGAAGGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAGgtgaaagctctctcgccttttctcactgtaaaaaacggcatctttcttttggggttttgcgttgcgtcccccggttttggcgttcttcctggctgcgcgc...

Basic information

species Oryza sativa
transcript LOC_Os01g61720.10
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88398384|gb|CI595785.1|CI595785
EST:     GAAGGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAG                         GCTTTAGCTGAAGACACAATAAAGGAACACCNNNNNNNTGGGTAAGAAAGG
genomic: GAAGGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAGgtgaaagctc ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG
EST: gi|58683061|gb|CK071748.1|CK071748
EST:     GGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAG                         GCTTTAGCTGAAGACACAATAAAGGAACACCNNNNNNNTGGGTAAGAAAGG
genomic: GGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAGgtgaaagctc ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG
EST: gi|88360261|gb|CI611980.1|CI611980
EST:     GGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAG                         GCTTTAGCTGAAGACACAATAAAGGAACACCNNNNNNNTGGGTAAGAAAGG
genomic: GGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAGgtgaaagctc ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG
EST: gi|29638610|gb|CB643619.1|CB643619
EST:     TTCAGTTGGGCGAGGAAGGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAG                         GCTTTAGCTGAAGACACAATAAAGGAACACCNNNNNNNTGGGTAAGAAAGG
genomic: TTCAGTTGGGCGAGGAAGGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAGgtgaaagctc ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG