1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAGCCCGACCTGCCGCCCCACCCCAGCCCCGACGCGGCCTCCGACGCCGTCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCTgtaagtccgagcttcgctgctcgatccagtgccaattttgatcttcgatctagtttgaactagacgagtcatgtgcttttccctctctgttgactcttgtgttgtag
species | Oryza sativa |
transcript | LOC_Os01g61580.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCT GAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTCEST: gi|88447799|gb|CI576995.1|CI576995
genomic: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCTgtaagtccga ... tgtgttgtagGAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTC
EST: TCCAGCCCGACGACATCGCCGC-GATGCCGCCGTTTCCGCGCAGATTGCT GAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTCEST: gi|87023709|gb|CI286460.1|CI286460
genomic: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCTgtaagtccga ... tgtgttgtagGAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTC
EST: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCT GAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTCEST: gi|117222253|gb|CT845768.1|CT845768
genomic: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCTgtaagtccga ... tgtgttgtagGAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTC
EST: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCT ---------GTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTCEST: gi|4716086|gb|AU057202.1|AU057202
genomic: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCTgtaagtccga ... tgtgttgtagGAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTC
EST: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCT GAGCCGCA-GTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTCEST: gi|88739798|gb|CI763306.1|CI763306
genomic: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCTgtaagtccga ... tgtgttgtagGAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTC
EST: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCT GAGCCGNAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTCEST: gi|27577857|gb|CB000552.1|CB000552
genomic: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCTgtaagtccga ... tgtgttgtagGAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTC
EST: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCT GAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTCEST: gi|88727221|gb|CI750876.1|CI750876
genomic: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCTgtaagtccga ... tgtgttgtagGAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTC
EST: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCT GAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTCEST: gi|88739031|gb|CI762539.1|CI762539
genomic: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCTgtaagtccga ... tgtgttgtagGAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTC
EST: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCT GAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTCEST: gi|14192082|gb|AU184293.1|AU184293
genomic: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCTgtaagtccga ... tgtgttgtagGAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTC
EST: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCT GAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTC
genomic: TCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCTgtaagtccga ... tgtgttgtagGAGCCGCAGGTGGATGGGCCTGCCTCCGGCACCACCGTCGAGTTGAAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCCCGACCTGCCGCCCCACCCCAGCCCCGACGCGGCCTCCGACGCCGTCCAGCCCGACGACATCGCCGCCGATGCCGCCGCTTCCGCGCAGATTGCTgtaagtccgagcttcgctgctcgatccagtgccaattttgatcttcgatctagtttgaactagacgagtcatgtgcttttccctctctgttgactcttgtgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT