Sequence
atgc intronic sequence ATGC exonic sequenceCAGGTGGGTGTGGCTAGAATCGCATGCAAGCGGGCTGGGTCGTGATCCCCATACATCAGCCATTGTTGCCGATGATGAGTGGTGGGAAAGCAAGAATGCGgtacgtacacttgaccataaatattttgaaccaacaattttgcttacaattggtattatctgaaatttagtacatgcatgcaattataaatacagttttg...
Basic information
species | Oryza sativa |
transcript | LOC_Os01g59250.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29626057|gb|CB631068.1|CB631068EST: ATACATCAGCCATTGTTGCCGATGATGAGTGGTGGGAAAGCAAGAATGCG CAAAATAAAGGTGTCTTAAGCTTCAGGAATGATCCTCTGAAGCACATTGAC
genomic: ATACATCAGCCATTGTTGCCGATGATGAGTGGTGGGAAAGCAAGAATGCGgtacgtacac ... tatgttgcagCAAAATAAAGGTGTCTTAAGCTTCAGGAATGATCCTCTGAAGCACATTGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGGTGGGTGTGGCTAGAATCGCATGCAAGCGGGCTGGGTCGTGATCCCCATACATCAGCCATTGTTGCCGATGATGAGTGGTGGGAAAGCAAGAATGCGgtacgtacacttgaccataaatattttgaaccaacaattttgcttacaattggtattatctgaaatttagtacatgcatgcaattataaatacagttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA