1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATTACTGCCCCCATCATCCTCTCTCTGGCCAAAGGGATAGAGGCCTCCCTGGATCCCCTGCCACGGATCATAACTCCCACACAGATGATTAGCAATGCAAgtgagattcctttccttttctttacacaatcttaccatcatgtgcactctttgcttgaattaacttgttctttgttctttgtttgtgcttatccgtaact...
species | Oryza sativa |
transcript | LOC_Os01g58740.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGATCCCCTGCCACGGATCATAACTCCCACACAGATGATTAGCAATGCAA CGGGGGTTCCATTGGAAAACATTCTTTATCTTGGAGGCCCTAACATTGCTTEST: gi|58603938|gb|CK014466.1|CK014466
genomic: GGATCCCCTGCCACGGATCATAACTCCCACACAGATGATTAGCAATGCAAgtgagattcc ... ttttctgcagCGGGGGTTCCATTGGAAAACATTCTTTATCTTGGAGGCCCTAACATTGCTT
EST: GATCCCCTGCCACGTGATCATAACTCCCACACAGATGATTAGCAATGCAA CGGGGGTTCCATTGGAAAACATTCTTTATCTTGGAGGCCCTAACATTGCTTEST: gi|58662929|gb|CK051615.1|CK051615
genomic: GATCCCCTGCCACG-GATCATAACTCCCACACAGATGATTAGCAATGCAAgtgagattcc ... ttttctgcagCGGGGGTTCCATTGGAAAACATTCTTTATCTTGGAGGCCCTAACATTGCTT
EST: GGATCCCCTGCCACGGATCATAACTCCCACACAGATGATTAGCAATGCAA CGGGGGTTCCATTGGAAAACATTCTTTATCTTGGAGGCCCTAACATTGCTT
genomic: GGATCCCCTGCCACGGATCATAACTCCCACACAGATGATTAGCAATGCAAgtgagattcc ... ttttctgcagCGGGGGTTCCATTGGAAAACATTCTTTATCTTGGAGGCCCTAACATTGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTACTGCCCCCATCATCCTCTCTCTGGCCAAAGGGATAGAGGCCTCCCTGGATCCCCTGCCACGGATCATAACTCCCACACAGATGATTAGCAATGCAAgtgagattcctttccttttctttacacaatcttaccatcatgtgcactctttgcttgaattaacttgttctttgttctttgtttgtgcttatccgtaact
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