1 5' 3' | 2 5' 3' | 3 5' 3' |
GGACCTCGTCCGCCGGGAAGCGGACCGGGGCGCCGCGCCGGAGTTCGTGGCGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCCgtaagcgtcctcgcttgactggaattcggtttgttcgcgtgtggtaatcttagttcttctgaccttgtttgtgcgatcgtag
species | Oryza sativa |
transcript | LOC_Os01g57740.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCC AAGAAGATGGAGTCCTCCTTCGCTGGGAAGGGCCTCGAGCGGGAGAGGAGCEST: gi|88340389|gb|CI659595.1|CI659595
genomic: CGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCCgtaagcgtcc ... gcgatcgtagAAGAAGATGGAGTCCTCCTTCGCTGGGAAGGGCCTCGAGCGGGAGAGGAGC
EST: CGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCC AAGAAGATGGAGTCCTCCTTCGCTGGGAAGGGCCTCGAGCGGGAGAGGAGCEST: gi|218491307|gb|FG970293.1|FG970293
genomic: CGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCCgtaagcgtcc ... gcgatcgtagAAGAAGATGGAGTCCTCCTTCGCTGGGAAGGGCCTCGAGCGGGAGAGGAGC
EST: CGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCC AAGAAGATGGAGTCCTCCTTCGCTGGGAAGGGCCTCAAGCGGGAGAGGAGCEST: gi|86499874|gb|CI142507.1|CI142507
genomic: CGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCCgtaagcgtcc ... gcgatcgtagAAGAAGATGGAGTCCTCCTTCGCTGGGAAGGGCCTCGAGCGGGAGAGGAGC
EST: CGGTCGACATCGGGGGCGAGGCGGAGACGCCCGGGGCAGAAGCGGAGCCC AAGAAGATGGAGTCCTCCTTCGCTGGGAAGGNCCTCGAGCGGGAGAGGAGC
genomic: CGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCCgtaagcgtcc ... gcgatcgtagAAGAAGATGGAGTCCTCCTTCGCTGGGAAGGGCCTCGAGCGGGAGAGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACCTCGTCCGCCGGGAAGCGGACCGGGGCGCCGCGCCGGAGTTCGTGGCGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCCgtaagcgtcctcgcttgactggaattcggtttgttcgcgtgtggtaatcttagttcttctgaccttgtttgtgcgatcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC