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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTCACATACGAGGGCCTCCAGCCAGACATCCTCCGCATCGCCAACGGCGACACCTCGCCGATCTTCTCCGGGAAGCCTATCTCCGAATTCCTCACGAGgtatagcacaatatataacgtgacatgttcatgcttccccgtgtgtgtacgcacgcacgctgctgcgtgcaaaacctagaaagacgtacgagttcatatctgtacagatcttcatgcaatggaatttcatcatgtccaccag

Basic information

species Oryza sativa
transcript LOC_Os01g57610.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g57610.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G061515_T01 (Zea mays), 5'ss of exon 1
TCGTCACATACGAGGGCCTCCAGCCAGACATCCTCCGCATCGCCAACGGCGACACCTCGCCGATCTTCTCCGGGAAGCCTATCTCCGAATTCCTCACGAGgtatagcaca-atatataacgtgacatgttcatgcttccccgtgtgtgtacgcacgcacgctgctgcgtgcaaaacctagaaagacgtacgagttcatatctgtacagatcttcatgcaatggaatttcatcatgtccaccag
||||||| ||||||||||||||||| ||||| |||||||| |||||||||||  ||||||||||| |||| || || || |||||||| ||||||||||||||    |   ||   | ||||   ||    | |||     |  || |   |      |     |    |    || | | || | ||||   || ||| |||   |  | |   ||  |   |                   
TCGTCACCTACGAGGGCCTCCAGCCGGACATACTCCGCATTGCCAACGGCGATGCCTCGCCGATCCTCTCAGGCAAACCCATCTCCGAGTTCCTCACGAGgtagtatattcatccctcacgtacgatcacaacgctgtgatgcatgcggctgtggaatcaaaatttaacg---gacatgggaacatgtactgatttataactgaggatgtttgtgtgtgaaccag------------------

upper sequence: LOC_Os01g57610.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ23432 (Selaginella moellendorffii), 5'ss of exon 1
TCGTCACATACGAGGGCCTCCAGCCAGACATCCTCCGCATCGCCAACGGCGACACCTCGCCGATCTTCTCCGGGAAGCCTATCTCCGAATTCCTCACGAGgtatagcacaatatataacgtgacatgttcatgcttccccgtgtgtgtacgcacgcacgctgctg-cgtgcaaaacctagaaagacgtacgagttcatatctgtacagatcttcatgcaatggaatttcatcatgtccaccag
|| |||| ||||||| |||| |||| || ||||  ||||| ||||| |||||||||||||| ||| ||||||   | || |||||||| |||||||| |||||    | ||  | |         | | |||         || | |   ||   | || || ||     || ||  | |     |  |                                                      
TCATCACCTACGAGGACCTCGAGCCCGAGATCCAACGCATTGCCAATGGCGACACCTCGCCCATCCTCTCCGCCCATCCCATCTCCGAGTTCCTCACCAGgtaagaaagaaattctcgatccttctttccatttgcgatgttgggcgatggcgatctcgatgttggtactcacaattttgctcctcccag-----------------------------------------------------

upper sequence: LOC_Os01g57610.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ25415 (Selaginella moellendorffii), 5'ss of exon 1
TCGTCACATACGAGGGCCTCCAGCCAGACATCCTCCGCATCGCCAACGGCGACACCTCGCCGATCTTCTCCGGGAAGCCTATCTCCGAATTCCTCACGAGgtatagcacaatatataacgtgacatgttcatgcttccccgtgtgtgtacgcacgcacgctgctgcgtgcaaaacctagaaagacgtacgagttcatatctgtacagatcttcatgcaatggaatttcatcatgtccaccag
|| |||| ||||||| |||| |||| || ||||  ||||| ||||| |||||||||||||| ||| ||||||   | || |||||||| |||||||| ||||| || |  | ||           | |  || ||||      | ||       |  || ||  |    | |           ||  || | ||     || | |||                                   
TCATCACCTACGAGGACCTCGAGCCCGAGATCCAACGCATTGCCAATGGCGACACCTCGCCCATCCTCTCCGCCCATCCCATCTCCGAGTTCCTCACCAGgta-agaaagaaat-----------tctcgatccttctttccatttgcgatgttgggcgatggcgatctcgatgtt----ggtactcacaattttgctcctct-cag-----------------------------------