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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCTGCCTCTCCGCCGCCCTCATCGCCGCTGCCCTGCTCCCCGGCGCCGCTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccgcgctcctcagatccgcccgctcctagctccagtttgttgtaagctagtttcgtgatcctgagctgcggcggaggcgttgtctagttcgga...

Basic information

species Oryza sativa
transcript LOC_Os01g56670.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 1
CGCCTGCCTCTCCGCCGCCCTCATCGCCGCTGCC---CTGCTCCCCGGCGCCGCTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccgcgctcctcagatccgcccgctcctagctccagtttgttgtaagctagtttcgtgatcctgagctgcggcggaggcgttgtctagttcgga------
   ||| ||||||||||||||| |||| || |||   |||||||||||||||||  ||||||| || ||||||||||||||||| |||||||||||||||||||||||||  ||   ||||||||||||| ||||||| |||   |  ||  |  |||||||| |||     ||||  |    |||   |||   | ||  |       
---CTGTCTCTCCGCCGCCCTCCTCGCTGCCGCCACTCTGCTCCCCGGCGCCGCCGTCGCCGAAGGTGTCACGCCCTCCGAGGCGCGCCGGCTCCGCGACGAGgtagtgcgggc---cctcagatccgcc-gctcctaactcttctacgtatt--gctagttttgtggcttcgagcgccaagcgagtgcttggtgattttagcgtttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88356084|gb|CI627532.1|CI627532
EST:     CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|88692969|gb|CI736544.1|CI736544
EST:     CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|88761662|gb|CI771218.1|CI771218
EST:     CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|88579110|gb|CI688081.1|CI688081
EST:     CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|88315165|gb|CI611829.1|CI611829
EST:     CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|88738554|gb|CI762062.1|CI762062
EST:     CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|88404794|gb|CI583601.1|CI583601
EST:     CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAGCATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|88315352|gb|CI613621.1|CI613621
EST:     CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|88584472|gb|CI702027.1|CI702027
EST:     CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|29678673|gb|CB674948.1|CB674948
EST:     CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|88740319|gb|CI763827.1|CI763827
EST:     CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|88452946|gb|CI574493.1|CI574493
EST:     TTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|88726361|gb|CI750016.1|CI750016
EST:     CTTTCGCCGATGGCGTCANGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT
EST: gi|88404616|gb|CI581052.1|CI581052
EST:     CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAG                         GTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAAGATGCTTTT
genomic: CTTTCGCCGATGGCGTCACGCCCTCCGAGGCCCGCCGGCTCCGCGACGAGgtagtgcccg ... ttttatgtagGTCAAAGATATGTTCTATCATGCATTTGATGGGTACATGCAACATGCTTTT