1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGGCGGGCTGGCCACGGAGCTGGAGGCGCACGGCGCGGACCTGCATGACGAGCTCTGGAGCGCCAGCTGCCTCGTCTCCGCCCCTCACCTCATCCGCAAGgtcacccaacacacgatgcgtggtccttcactttctccataacataactccgagttgttctgacggcttcgtgcaattaagcgctgcag
species | Oryza sativa |
transcript | LOC_Os01g56610.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTCGTCTCCGCCCCTCACCTCATCCGCAAG GTGCATTTGGACTACCTCGACGCCGGCGCCAACATCATAACCTCGGCGTCTEST: gi|218500996|gb|FG966566.1|FG966566
genomic: CCTCGTCTCCGCCCCTCACCTCATCCGCAAGgtcacccaac ... agcgctgcagGTGCATTTGGACTACCTCGACGCCGGCGCCAACATCATAACCTCGGCGTCT
EST: AGCTCTGGAGCGCCAGCTGCCTCGTCTCCGCCCCTCACCTCATCCGCAAG GTGCATTTGGACTACCTCGACGCCGGCGCCAACATCATAACCTCGGCGTCT
genomic: AGCTCTGGAGCGCCAGCTGCCTCGTCTCCGCCCCTCACCTCATCCGCAAGgtcacccaac ... agcgctgcagGTGCATTTGGACTACCTCGACGCCGGCGCCAACATCATAACCTCGGCGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGGGCTGGCCACGGAGCTGGAGGCGCACGGCGCGGACCTGCATGACGAGCTCTGGAGCGCCAGCTGCCTCGTCTCCGCCCCTCACCTCATCCGCAAGgtcacccaacacacgatgcgtggtccttcactttctccataacataactccgagttgttctgacggcttcgtgcaattaagcgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC