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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTTTATAAGCTAAGAATAATCTTGTGTTATCTTCTCTTTGCAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGgtttgtttctggatagaatcagtatcttaaagttaaaatgtatttttgtcatcacctatttaaattactctcactttgaggaaatgcattataacaccat...

Basic information

species Oryza sativa
transcript LOC_Os01g55974.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55974.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 7
TGCCTTTATAAGCTAAGAATAATCTTGTGTTATCTTCTCTTTGCAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGgtttgtttctggatagaatcagtatcttaaagttaaaatgtatttttgtcatcacctatttaaatt-actctcactttgaggaaatgcattataacaccat----
                                              ||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||| |||   ||| ||||   | |||  ||||   |     |||    |     ||||||||| || | |||    | ||  |  |||   || |  |    
----------------------------------------------AAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctctttgtaggatcatggtgtta--gttagggttacagtttacggtagtgcatttaaatttacccccac---aatgacctatatttccactcattttgt

upper sequence: LOC_Os01g55974.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA05G03380.1 (Glycine max), 5'ss of exon 7
TGCCTTTATAAGCTAAGAATAATCTTGTGTTATCTTCTCTTTGCAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGgtttgtt-tctggatagaatcagtatcttaaa-gttaaaatgtatttttgtcatcacctatttaaattactctcactttgaggaaatgcattataacaccat
                                                  ||||||| |||||||| || |||||||| ||||||||||| || ||||||||| ||   || | |    |     | | | | |||   ||| ||  || |    | |   |      | | |   |   || | ||   || ||  |  | 
----------------------------------------------CGGCTATATGTGACCATGTTTCCGTGCAATGAATGTGCTAAGATCATAATCCAGgttggtaaccttgttctgcttgacgtataatatgttgtgatgaatcattctgcagatcagatctg--cattttatatcaaagaatataacttttatgagaaa

upper sequence: LOC_Os01g55974.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA17G13950.1 (Glycine max), 5'ss of exon 7
TGCCTTTATAAGCTAAGAATAATCTTGTGTTATCTTCTCTTTGCAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGgtttgtttctggatagaatcagtatcttaaagttaaaatgtatttttgtcatcacctatttaaattactctcactttgaggaaatgcattataacaccat--------
                                                  ||||||| |||||||| ||||||||||| ||||||||||| || ||||||||| ||  |    |    || |   ||| ||||  |  | |   |    |||     |  | |  |   |    | | |  ||| |||| |||  ||  |        
----------------------------------------------CGGCTATATGTGACCATGTTTCCCTGCAATGAATGTGCTAAGATCATAATCCAGgttggtaaccttgt----tctg---cttcaagtatatgttttgatgaaccattttgcagatgaggtctgcattttcttaacaaa-gcatcatataacttttatgagag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88841503|gb|CI005583.1|CI005583
EST:     TGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAG                         TCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCT
genomic: TGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGgtttgtttct ... tttcttgcagTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCT