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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGCTGCCGCGGCCGGCGGTGGCCGTGGCGGTGCCCGTGCCACAGGTTCGGCCGGCGCAGCCGCAGCCAGTGCCGCGGCCACCGGTCGCCGTTCCATTgtgagtgtgccagtacctagatttatgtttagcatcaagctttacatttttacttctcaattgggtaatttctctcttctaactcctttttggtgattca...

Basic information

species Oryza sativa
transcript LOC_Os01g55580.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55580.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G059678_T01 (Zea mays), 5'ss of exon 1
TGCCGCTGCCGCGGCCGGCGGTGGCCGTGGCGGTGCCCGTGCCACAGGTTCGGCCGGCGCAGCCGCAGCCAGTGCCGCGGCCACCGGTCGCCGTTCCATTgtgagtgtgccagtacctagatttatgtttagcatcaagctttacatttttacttctcaattgggtaatttctctcttc-taactc--ctttttggtgattca
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TGCATCAGGTGGTGGGGCATGTGCCGCTGGCGGTCTCTGTACCGCAGCTTCGTCCGGTGCCGCCGCAGCCAGTCCAGCGCCCCCCGGTCGCCGTTCCCTTgtgagtgtccccgttctgagatttaga---agttttgaaacttccgcctctctgtttggtacgggcttcgttttgctcgatgaccgagcccgttgtcgtcttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29621005|gb|CB626016.1|CB626016
EST:     CGGCCGGCGCAGCCGCAGCCAGTGCCGCGGCCACCGGTCGCCGTTCCATT                         GAAACCAGAGTCACCAAAGCCACCACGGGCACGGCTTTATGAAGGGAAAGA
genomic: CGGCCGGCGCAGCCGCAGCCAGTGCCGCGGCCACCGGTCGCCGTTCCATTgtgagtgtgc ... tgtattgtagGAAACCAGAGTCACCAAAGCCACCACGGGCACGGCTTTATGAAGGGAAAGA