1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCGGCGACGATGGCTGAGGTGAAGCCGGAAGAGATCAGCTACCCGCCCATGGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtgagagccgaagcggcggcggctgcattgcattttttcctgctcgggatttcgcattctgaatccacgtcttggatttttgctgtttcag
species | Oryza sativa |
transcript | LOC_Os01g55500.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGGEST: gi|88583644|gb|CI701146.1|CI701146
genomic: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtgaga ... gctgtttcagGGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGG
EST: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGGEST: gi|88361794|gb|CI681954.1|CI681954
genomic: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtgaga ... gctgtttcagGGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGG
EST: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGGEST: gi|88391930|gb|CI683748.1|CI683748
genomic: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtgaga ... gctgtttcagGGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGG
EST: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGGEST: gi|88591374|gb|CI707404.1|CI707404
genomic: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtgaga ... gctgtttcagGGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGG
EST: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GGGAGGCGATCATACTGGGATTCCAGCACTACATCCCGCCGCTGGGCACGGEST: gi|88577986|gb|CI674609.1|CI674609
genomic: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtgaga ... gctgtttcagGGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGG
EST: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGGEST: gi|88731891|gb|CI753401.1|CI753401
genomic: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtgaga ... gctgtttcagGGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGG
EST: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGG
genomic: GGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtgaga ... gctgtttcagGGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCGACGATGGCTGAGGTGAAGCCGGAAGAGATCAGCTACCCGCCCATGGAGCAGCTGCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtgagagccgaagcggcggcggctgcattgcattttttcctgctcgggatttcgcattctgaatccacgtcttggatttttgctgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG