1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTCGTCCATCCGCGGCGCCGCCGCGAGAGCCGCATCCCGAGCCGGGCCGGCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAGgtacgcgcgagatctcggagttgaggacttctggttcactaggaatttttgtttgctttccttgatctggatggggagtttagtgcttgtgtttttttttgtttccttttggattctgcag
species | Oryza sativa |
transcript | LOC_Os01g55020.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAG GTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCAEST: gi|86599649|gb|CI253634.1|CI253634
genomic: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAGgtacgcgcga ... gattctgcagGTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCA
EST: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAG GTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCAEST: gi|86888910|gb|CI307968.1|CI307968
genomic: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAGgtacgcgcga ... gattctgcagGTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCA
EST: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAG GTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCAEST: gi|88745177|gb|CI768537.1|CI768537
genomic: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAGgtacgcgcga ... gattctgcagGTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCA
EST: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAG GTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCAEST: gi|87022331|gb|CI282283.1|CI282283
genomic: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAGgtacgcgcga ... gattctgcagGTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCA
EST: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAG GTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCAEST: gi|88744479|gb|CI767839.1|CI767839
genomic: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAGgtacgcgcga ... gattctgcagGTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCA
EST: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAG GTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCA
genomic: GCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAGgtacgcgcga ... gattctgcagGTCGCCGGTGGAGATGAGCAGCGTCTGCTTGGAGACGCTGATGCCCATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCGTCCATCCGCGGCGCCGCCGCGAGAGCCGCATCCCGAGCCGGGCCGGCTCCGCTCCCGAGGAGGCTGCCCGCCGCTGCTCCCCGTCTCATCTTGAGgtacgcgcgagatctcggagttgaggacttctggttcactaggaatttttgtttgctttccttgatctggatggggagtttagtgcttgtgtttttttttgtttccttttggattctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT