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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGATGCACATCGCCGCCTGCGAGGGGCAAGCCGAGGTCGTCGAGCTGCTCCTCCAGCGTGGGGCGGATGCCGTCGCCGAGGACCAGTGGGGCAGCACGgtgagcctccctgaactttgttttgttttgctgctattggtgattttattgctctagctgaaaaacctcatgattactcggggataatctgagttgaatt...

Basic information

species Oryza sativa
transcript LOC_Os01g54480.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54480.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G045366_T01 (Zea mays), 5'ss of exon 1
GGCGATGCACATCGCCGCCTGCGAGGGGCAAGCCGAGGTCGTCGAGCTGCTCCTCCAGCGTGGGGCGGATGCCGTCGCCGAGGACCAGTGGGGCAGCACGgtgagcctccctgaactttgttttgttttgctgctattggtgattttattgctctagctgaaaaacctca--tgattactcggg-gataatctgagttgaatt
|||| |||||||||||||||||||||| || |||||||||||||||||||| || ||| | || ||||| |||| ||  |||||||||||||||||||||||| | |   || |  ||| |  |||||   | |   |    ||||| ||||  | | |||    | | |  | ||| ||     || ||    | | | |  
GGCGCTGCACATCGCCGCCTGCGAGGGCCACGCCGAGGTCGTCGAGCTGCTGCTTCAGAGCGGCGCGGAGGCCGCCGTGGAGGACCAGTGGGGCAGCACGgtgcggcctgcttacgtttttagtgtttccttacagct--ccattttcttgcgttggatgaggttcttaaaatcatttcttaaaagacaaatctaatagtaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117235877|gb|CT847833.1|CT847833
EST:     TCCTCCAGCGTGGGGCGGATGCCGTCGCCGAGGACCAGTGGGGCAGCACG                         CCTTTGGCAGACGCATTGCATTACCAGAACCATGATGTGATCAAGATCTTG
genomic: TCCTCCAGCGTGGGGCGGATGCCGTCGCCGAGGACCAGTGGGGCAGCACGgtgagcctcc ... catctggcagCCTTTGGCAGACGCATTGCATTACCAGAACCATGATGTGATCAAGATCTTG
EST: gi|29633163|gb|CB638172.1|CB638172
EST:     TCCTCCAGCGTGGGGCGGATGCCGTCGCCGAGGACCAGTGGGGCAGCACG                         CCTTTGGCAGACGCATTGCATTACCAGAACCATGATGTGATCAAGATCTTG
genomic: TCCTCCAGCGTGGGGCGGATGCCGTCGCCGAGGACCAGTGGGGCAGCACGgtgagcctcc ... catctggcagCCTTTGGCAGACGCATTGCATTACCAGAACCATGATGTGATCAAGATCTTG
EST: gi|29678487|gb|CB674762.1|CB674762
EST:     TCCTCCAGCGTGGGGCGGATGCCGTCGCCGAGGACCAGTGGGGCAGCACG                         CCTTTGGCAGACGCATTGCATTACCAGAACCATGATGTGATCAAGATCTTG
genomic: TCCTCCAGCGTGGGGCGGATGCCGTCGCCGAGGACCAGTGGGGCAGCACGgtgagcctcc ... catctggcagCCTTTGGCAGACGCATTGCATTACCAGAACCATGATGTGATCAAGATCTTG
EST: gi|66912875|gb|CX099723.1|CX099723
EST:     TCCTCCAGCGTGGGGCGGATGCCGTCGCCGAGGACCAGTGGGGCAGCACG                         CCTTTGGCAGACGCATTGCATTTACCAGAACCATGATGTGATCAAGATCTT
genomic: TCCTCCAGCGTGGGGCGGATGCCGTCGCCGAGGACCAGTGGGGCAGCACGgtgagcctcc ... catctggcagCCTTTGGCAGACGCATTGCATT-ACCAGAACCATGATGTGATCAAGATCTT
EST: gi|58694022|gb|CK082709.1|CK082709
EST:     TCCTCCAGCGTGGGGCGGATGCCGTCGCCGAGGACCAGTGGGGCAGCACG                         CCTTTGGCAGACGCATTGCATTACCAGAACCATGATGTGATCAAGATCTTG
genomic: TCCTCCAGCGTGGGGCGGATGCCGTCGCCGAGGACCAGTGGGGCAGCACGgtgagcctcc ... catctggcagCCTTTGGCAGACGCATTGCATTACCAGAACCATGATGTGATCAAGATCTTG