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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTCGTCTACCAGGTGCCCGGGGGCGCCGCCGGCGGTGGCCAGCGGCAGCCGGTGTTCACCTGCCGGTTCAGCGCTGGGCGGAGGGCAACCAGGACCAGgttggtgacttggtgtgcggtacacgtattacaatgtgcatgcatcattccatcttcttcgtttgctcgctaagttaagcttgcggtgttaataatttgc...

Basic information

species Oryza sativa
transcript LOC_Os01g53790.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g53790.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G078210_T01 (Zea mays), 5'ss of exon 1
CGGTCGTCTACCAGGTGCCCGGGGGCGCCGCCGGCGGTGGCCAGCGGCAGCCGGTGTTCACCTGCCGGTTCAGCGCTGGGCGGAGGGCAACCAGGACCAGgttggtgacttggtgtgcggtacacgtattacaatgtgcatgcatcattccatcttcttcgtt---tgctcgctaagttaagcttgcggtgttaataatttgc
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CCGTCGTGTACCAGGTGCCCGGTGGAGCCGCCCGCGGAGGGCAGCGGCAGCCGGTCTTCACCTGCCGGTTCAGCGCCGGCCGGAGGGCAGCCAGGAGCAGgttggt-atttagcctggcgtgctagctgtttacctgacacacatttctgtgtgccccttgcaacattttcatcagttt--gcttgctcgttcagttaccctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29679128|gb|CB675403.1|CB675403
EST:     GGGCAACCAGGACCAG                         ATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCG
genomic: GGGCAACCAGGACCAGgttggtgact ... ttttgtccagATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCG
EST: gi|29679127|gb|CB675402.1|CB675402
EST:     CCGGTGTTCACCTGCCGGTTCAGCGCTGGGCGGAGGGCAACCAGGACCAG                         ATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCG
genomic: CCGGTGTTCACCTGCCGGTTCAGCGCTGGGCGGAGGGCAACCAGGACCAGgttggtgact ... ttttgtccagATCGTTGACGTCGGAGTCGTCCATGACTCGGAGCACCAGCAGGAAGCTGCG