1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTTCCTCCTCGTCGTCGGCGGCGGCGGCCATGAAGGCCAAGATCTACCGCCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagccccttgcttggtagcttggattcgaaagcatcgcttctattttgctgtagatccgatccgatcgctttttttttttggctcgcttgttctacct...
species | Oryza sativa |
transcript | LOC_Os01g53520.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|88342993|gb|CI641519.1|CI641519
genomic: GGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|58682983|gb|CK071670.1|CK071670
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGACGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|568230|gb|D39066.1|D39066
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC -TCACTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCEST: gi|58673667|gb|CK062353.1|CK062353
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTG-CTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTC
EST: CCTCTTCGGACGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|218484106|gb|FG945297.1|FG945297
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGACGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|88692279|gb|CI735854.1|CI735854
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|7608733|gb|AU090514.1|AU090514
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|29663264|gb|CB659539.1|CB659539
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|38483191|gb|CF966993.1|CF966993
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGACGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|58682578|gb|CK071265.1|CK071265
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGACGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|88740336|gb|CI763844.1|CI763844
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|58596037|gb|CK006565.1|CK006565
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGACGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|33678278|gb|CF306517.1|CF306517
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCGEST: gi|88728607|gb|CI752117.1|CI752117
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
EST: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGC CTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
genomic: CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagcccct ... gtgcttgcagCTGCTGATCTCGTGCTATGGAGGAACAAGAAGATCTCCGGTGGGGTGCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCCTCCTCGTCGTCGGCGGCGGCGGCCATGAAGGCCAAGATCTACCGCCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCgtaagccccttgcttggtagcttggattcgaaagcatcgcttctattttgctgtagatccgatccgatcgctttttttttttggctcgcttgttctacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccttgc