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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGGTCGGAGGTGATCCGGATCGGGTGCGGCTGCAAGGACGAGCTCGGCGCCGCGCACCGCCACTGCGCCGAGGCCTGGTTCAGGATCAAGGGCGATAGgtatacatcgctctatcccgaaatcgttcgtccctgtgccttgtgctaggattgcgtggtaggtgtttgttgtaattacaagtagagtcaccggcttgcc...

Basic information

species Oryza sativa
transcript LOC_Os01g53130.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g53130.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G082512_T03 (Zea mays), 5'ss of exon 1
CCGGGTCGGAGGTGATCCGGATCGGGTGCGGCTGCAAGGACGAGCTCGGCGCCGCGCACCGCCACTGCGCCGAGGCCTGGTTCAGGATCAAGGGCGATAGgtatacatcgctctatcccgaaatcgttcgtccctgtgccttgtgctaggattgcgtggtaggtgtttgttgtaattacaagtagagtcaccggcttgcc-
| || || |||||||| | | | || ||||||||||||||||||||||||||||||||||  || ||||||||||| ||||| |||||||||||||||||||||   |||||| |||| |   | |  | |   ||  |  |    | ||  |  |  ||        ||||  ||      |||        |||     
CAGGTTCCGAGGTGATGCTGCTAGGCTGCGGCTGCAAGGACGAGCTCGGCGCCGCGCACCAGCAATGCGCCGAGGCGTGGTTTAGGATCAAGGGCGATAGgtatctctcgctccatcctgtcctggaccctgt-tgctcgctagctttggtatatgcagtgatctggggttgggatgcgggataggtgtttgcgctaattc