Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGCCTCCGGTTTCGCCGCCGCGTACCTCCTCGGCACCCTCACGTGGCGCGCCTTCGGGCCCAAGGGGCTCGTCCTCGTCGCCTCCTACTTCGTATTGgtgagtggatccggtgctgcattgacagtttggctgttcgtagaggtggttcagtgataagtatggaattaagctacactaacgcattgtagtttgtttg...

Basic information

species Oryza sativa
transcript LOC_Os01g52864.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g52864.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G166383_T01 (Zea mays), 5'ss of exon 1
CTCCGCCTCCGGTTTCGCCGCCGCGTACCTCCTCGGCACCCTCACGTGGCGCGCCTTCGGGCCCAAGGGGCTCGTCCTCGTCGCCTCCTACTTCGTATTGgtgagtggatccggtgctgcattgacagtttggctgttcgtagaggtggttcag---tgataagtatggaattaagctacactaacgcattgtagtttgtttg
 ||||||||||| ||||||||||| || ||| | |||||||| ||||||||||| |||||  || ||||  || ||||||| | | | ||||||||  |||||||| |||||| | | |   | |      || | |         | ||| ||   | ||  |  ||   |   | |     ||  |  || || | | |  
GTCCGCCTCCGGCTTCGCCGCCGCCTATCTCTTGGGCACCCTGACGTGGCGCGCGTTCGGAGCCCAGGGTTTCCTCCTCGTTGTCGCATACTTCGTTGTGgtgagtcgatccgat-cggttcttattacccgg-tatggactactttagtttagatttaattggattgtgctgtggattggtaaatcctctggaggtcgatg-