1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGGCTCAACAGAGAGGCCGCGTCAAGGCCGCTGCCGCTCGGCTCGCACGACGTCGTCCCGCGCGTCATGCCCTTCTTCTGCAACGTCCTGAAAGAGCACGgtaacacaccactgccagctgatcaccatgttccccatggcttttgtgatgtcaaaaacgccgcgcgcttctggtattgaaccagcgactagcatcgctc...
species | Oryza sativa |
transcript | LOC_Os01g52790.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCGTCCCGCGCGTCATGCCCTTCTTCTGCAACGTCCTGAAAGAGCACG GGAAACTGTCGTTCGTTTGGACTGGCCCAAAGCCATTCGGTGATTATCAGAEST: gi|29615818|gb|CB620830.1|CB620830
genomic: CGTCGTCCCGCGCGTCATGCCCTTCTTCTGCAACGTCCTGAAAGAGCACGgtaacacacc ... tcaattgcagGGAAACTGTCGTTCGTTTGGACTGGCCCAAAGCCATTCG-TGATTATCAGA
EST: CGTCGTCCCGCGCGTCATGCCCTTCTTCTGCAACGTCCTGAAAGAGCACG GGAAACTGTCGTTCGTTTGGACTGGCCCAAAGCCATTCGTGATTATCAGAG
genomic: CGTCGTCCCGCGCGTCATGCCCTTCTTCTGCAACGTCCTGAAAGAGCACGgtaacacacc ... tcaattgcagGGAAACTGTCGTTCGTTTGGACTGGCCCAAAGCCATTCGTGATTATCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCTCAACAGAGAGGCCGCGTCAAGGCCGCTGCCGCTCGGCTCGCACGACGTCGTCCCGCGCGTCATGCCCTTCTTCTGCAACGTCCTGAAAGAGCACGgtaacacaccactgccagctgatcaccatgttccccatggcttttgtgatgtcaaaaacgccgcgcgcttctggtattgaaccagcgactagcatcgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccgcg