1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCGGCCAACTCCAGCCATGTCGGACTCCAAGGCCGCGGCGGCGGTCACCCTCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccctgtccattctcaaagctcttcctcctccttgccgccatggctctgtgattgatctctctctctcgctggatgaatccttaccttgcag
species | Oryza sativa |
transcript | LOC_Os01g52490.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTC GTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAGEST: gi|66927289|gb|CX114137.1|CX114137
genomic: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccc ... taccttgcagGTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
EST: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTC GTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAGEST: gi|286327|gb|D15135.1|D15135
genomic: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccc ... taccttgcagGTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
EST: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTC GTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAGEST: gi|4716872|gb|AU057988.1|AU057988
genomic: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccc ... taccttgcagGTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
EST: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTC GTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAGEST: gi|38468914|gb|CF953045.1|CF953045
genomic: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccc ... taccttgcagGTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
EST: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTC GTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAGEST: gi|55436887|gb|CV731621.1|CV731621
genomic: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccc ... taccttgcagGTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
EST: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTC GTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAGEST: gi|29685667|gb|CB681942.1|CB681942
genomic: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccc ... taccttgcagGTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
EST: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTC GTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAGEST: gi|8857380|gb|AU094698.1|AU094698
genomic: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccc ... taccttgcagGTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
EST: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTC GTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAGEST: gi|4716870|gb|AU057986.1|AU057986
genomic: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccc ... taccttgcagGTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
EST: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTC GTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAGEST: gi|89167241|gb|CI252772.1|CI252772
genomic: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccc ... taccttgcagGTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
EST: CTCCCGCAAGCAATTC GTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAGEST: gi|29659093|gb|CB655368.1|CB655368
genomic: CTCCCGCAAGCAATTCgtgagcgccc ... taccttgcagGTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
EST: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTC GTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
genomic: TCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccc ... taccttgcagGTGCTCGAGGTGATCCACCCCGGCCGGCCCAACGTCTCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCCAACTCCAGCCATGTCGGACTCCAAGGCCGCGGCGGCGGTCACCCTCCGCACCCGCAAGTTCATGACCAACCGCCTCCTCTCCCGCAAGCAATTCgtgagcgccctgtccattctcaaagctcttcctcctccttgccgccatggctctgtgattgatctctctctctcgctggatgaatccttaccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA