1 5' 3' | 2 5' 3' | 3 5' 3' |
CCCGGAAGGAGGCAGATCGGCGGCGCGCGTCACTCCAATCTCCGgtaagaagaaaccactcattgcaatcttctcgtagcatggcttgttctgtaacttctgttggcgttagcctgttatgcgttcgtttcgctgcatgaattg...
species | Oryza sativa |
transcript | LOC_Os01g51020.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATCGGCGGCGCGCGT-ACTCCAATCTCCG GTTAGGATAAATGG-CACGATTCCAGATTCTCTGGTCTGGGAGCTTGTCAAEST: gi|33808736|gb|CF330253.1|CF330253
genomic: GATCGGCGGCGCGCGTCACTCCAATCTCCGgtaagaagaa ... gattctttagGTTAGGATAAATGGCCACGATTCCAGATTCTCTGGTCTGGGAGCTTGTCAA
EST: AGATCGGCGGCGCGCGTCACTCCAATCTCCG GTTAGGATAAATGGCCACGATTCCAGATTCTCTGGTCTGGGAGCTTGTCAA
genomic: AGATCGGCGGCGCGCGTCACTCCAATCTCCGgtaagaagaa ... gattctttagGTTAGGATAAATGGCCACGATTCCAGATTCTCTGGTCTGGGAGCTTGTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGGAAGGAGGCAGATCGGCGGCGCGCGTCACTCCAATCTCCGgtaagaagaaaccactcattgcaatcttctcgtagcatggcttgttctgtaacttctgttggcgttagcctgttatgcgttcgtttcgctgcatgaattg
- - AAGGAG
- - - - - GCAGAT