1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CGGCGAGCGGCGAGGCTCGGGGACTCGATTACCCTGCGAGGAATCGAGGTCGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCTgtgagtgcgaactgtttcccttcttccttcgactgcgtgttccctgatgattcgttgtttctccatgccgccatgcgttgcccgttctcgtttatgcaat...
species | Oryza sativa |
transcript | LOC_Os01g50616.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCT ---GTGCAGGTTTTGAAGGCATTGTGCATGATGATGATAAGAAAGAGTGGAEST: gi|29646803|gb|CB651810.1|CB651810
genomic: CGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCTgtgagtgcga ... aactatatagCAGGTGCAGGTTTTGAAGGCATTGTGCATGATGATGATAAGAAAGAGTGGA
EST: CGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCT ---GTGCAGGTTTTGAAGGCATTGTGCATGATGATGATAAGAAAGAGTGGAEST: gi|33674799|gb|CF303038.1|CF303038
genomic: CGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCTgtgagtgcga ... aactatatagCAGGTGCAGGTTTTGAAGGCATTGTGCATGATGATGATAAGAAAGAGTGGA
EST: CGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCT CAGGTGCAGGTTTTGAAGGCATTGTGCATGATGATGATAAGAAAGAGTGGAEST: gi|29625600|gb|CB630611.1|CB630611
genomic: CGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCTgtgagtgcga ... aactatatagCAGGTGCAGGTTTTGAAGGCATTGTGCATGATGATGATAAGAAAGAGTGGA
EST: CGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCT CAGGTGCAGGTTTTGAAGGCATTGTGCATGATGATGATAAGAAAGAGTGGAEST: gi|33675178|gb|CF303417.1|CF303417
genomic: CGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCTgtgagtgcga ... aactatatagCAGGTGCAGGTTTTGAAGGCATTGTGCATGATGATGATAAGAAAGAGTGGA
EST: CGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCT CAGGTGCAGGTTTTGAAGGCATTGTGCATGATGATGATAAGAAAGAGTGGAEST: gi|29663641|gb|CB659916.1|CB659916
genomic: CGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCTgtgagtgcga ... aactatatagCAGGTGCAGGTTTTGAAGGCATTGTGCATGATGATGATAAGAAAGAGTGGA
EST: CGGACCGCGGGTGGGGAAGGCGAAAATGGCGGGGTCCATCGATCGGCCCT CAAGTGCAGGTTTTGAAGGCATTGTGCATGATGATGATAAGAAAGAGTGGA
genomic: CGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCTgtgagtgcga ... aactatatagCAGGTGCAGGTTTTGAAGGCATTGTGCATGATGATGATAAGAAAGAGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGAGCGGCGAGGCTCGGGGACTCGATTACCCTGCGAGGAATCGAGGTCGGACCGCGGGTGGGGAAGGCGAAGATGGCGGGGTCCATCGATCGGCCCTgtgagtgcgaactgtttcccttcttccttcgactgcgtgttccctgatgattcgttgtttctccatgccgccatgcgttgcccgttctcgtttatgcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccgcc