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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGGCCTTCTCCTGGTTCTCAACTTCTGCATGTACGTCATCGTGGCGGCGGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCGgtaaaactagctcacattttgatttaccgtgtcgatctcgatggtgtcttgttatcgggcacaacgaaccaaaacttgctctaaattgagattggtgcctaattatgtttgtcaatagaaagtgcatatattttgaagctagatttgtgactgtttgagcgtatgtactgcatgtacgtgtag

Basic information

species Oryza sativa
transcript LOC_Os01g50440.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g50440.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G032594_T01 (Zea mays), 5'ss of exon 1
GCCGGCCTTCTCCTGGTTCTCAACTTCTGCATGTACGTCATCGTGGCGGCGGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCGgtaaaactagctcacattttgatttaccgtgtcgatctcgatggtgtcttgttatcgggcacaacgaaccaaaacttgctctaaattgagattggtgcctaattatgtttgtcaatagaaagtgcatatattttgaagctagatttgtgactgtttgagcgtatgtactgcatgtacgtgtag
|||||||| || ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  ||||| |||||||||||| |  |    ||  || | || |  |  |   ||     |    || ||||| ||  |     |  ||  |  ||      ||  ||  || |   |     ||  || |      |  |||||||| | | | ||                                            
GCCGGCCTCCTGCTGGTGCTCAACTTGTGCATGTACGTCATCGTGGCGGCGGTGGGCGGCTGGGCCATCAACCACGCCATCAACTACGGCTTCTTCATCGgtaatataa----acgcttcgtttaaatgctttcgtc----cgtcagctggttattgg-taaggtaactcagtaactgt-----atgtagtatgttctttggcgctgcatgacgcatatatatgcatatactat-atgcag------------------------------------------

upper sequence: LOC_Os01g50440.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G057283_T01 (Zea mays), 5'ss of exon 1
GCCGGCCTTCTCCTGGTTCTCAACTTCTGCATGTACGTCATCGTGGCGGCGGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCGgtaaaactagctcacattttgatttaccgtgtcgatctcgatggtgtcttgttatcgggcacaacgaaccaaaacttgctctaaattgagattggtgcctaattatgtttgtcaatagaaagtgcatatattttgaagctagatttgtgactgtttgagcgtatgtactgcatgtacgtgtag
|||||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||  ||||| |||||||||||| | | ||| || | | |   ||     ||  |   |   ||   ||  |  ||| |  |            || || |       || || ||| ||   ||   ||    |  |  |  |||||||  || ||                                             
GCCGGCCTCCTCCTGGTGCTCAACTTCTGCATGTACATCATCGTGGCGGCGGTGGGCGGCTGGGCCATCAACCACGCCATCAACTACGGCTTCTTCATCGgtaacaat-gctgacttataggagtag---atcagt---ggcagtaggttcatgccggtcgta------------tttcttt-------gactgatgcatatgcatacctgctgctgtactgcacatatatgatgcag---------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88339665|gb|CI660381.1|CI660381
EST:     GGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCG                         GTTCCGGGATGGCGCTGCCGGCGAACTTCTCCCCGATCTACTTCCCGATGG
genomic: GGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCGgtaaaactag ... gtacgtgtagGTTCCGGGATGGCGCTGCCGGCGAACTTCTCCCCGATCTACTTCCCGATGG
EST: gi|88581058|gb|CI698030.1|CI698030
EST:     GGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCG                         GTTCCGGGATGGCGCTGCCGGCGAACTTCTCCCCGATCTACTTCCCGATGG
genomic: GGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCGgtaaaactag ... gtacgtgtagGTTCCGGGATGGCGCTGCCGGCGAACTTCTCCCCGATCTACTTCCCGATGG
EST: gi|88423562|gb|CI579274.1|CI579274
EST:     GGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCG                         GTTCCGGGATGGCGCTGCCGGCGAACTTCTCCCCGATCTACTTCCCGATGG
genomic: GGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCGgtaaaactag ... gtacgtgtagGTTCCGGGATGGCGCTGCCGGCGAACTTCTCCCCGATCTACTTCCCGATGG
EST: gi|86903578|gb|CI300432.1|CI300432
EST:     GGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCG                         GTTCCGGGATGGCGCTGCCGGCGAACTTCTCCCCGATCTACTTCCCGATGG
genomic: GGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCGgtaaaactag ... gtacgtgtagGTTCCGGGATGGCGCTGCCGGCGAACTTCTCCCCGATCTACTTCCCGATGG
EST: gi|95100851|gb|CI692569.1|CI692569
EST:     GGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCG                         GTTCCGGGATGGCGCTGCCGGCGAACTTCTCCCCGATCTACTTCCCGATGG
genomic: GGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCGgtaaaactag ... gtacgtgtagGTTCCGGGATGGCGCTGCCGGCGAACTTCTCCCCGATCTACTTCCCGATGG
EST: gi|5038579|gb|AU070689.1|AU070689
EST:     GGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCG                         GTTCCGGGATGGCGCTGCCGGCGAACTTCTCCCCGATCTACTTCCCGATGG
genomic: GGTCGGCGGCTGGGCCATCAACCACGCCATCCACACCGGCTACTTCATCGgtaaaactag ... gtacgtgtagGTTCCGGGATGGCGCTGCCGGCGAACTTCTCCCCGATCTACTTCCCGATGG