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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGCCGCGGCGCAGTGCCTCGACTGGGCCCCCGCGCGCCGCCGCGTGCGCGGCGCCTTCGCGCCTGTGCTCCCCACCCTCGACCACTGCCTGTTCAAGgtccgtacgcctgccacttgaaaaaatggttttagattagcagtagagtaaacagttaagatgaggtgaagtcgctcttggatcggtggtactgttgatt...

Basic information

species Oryza sativa
transcript LOC_Os01g49380.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g49380.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G085438_T01 (Zea mays), 5'ss of exon 1
GGCCGCCGCGGCGCAGTGCCTCGACTGGGCCCCCGCGCGCCGCCGCGTGCGCGGCGCCTTCGCGCCTGTGCTCCCCACCCTCGACCACTGCCTGTTCAAGgtccg-tacgcctgccacttgaaa--aaatggttttagattagcagtagagtaaacagttaagatgaggtgaagtcgctcttggatcggtggtactgttgatt
|||||||||||| ||||| || |||||||| |||||||| || || ||||| | |||||||||||| |||||||||||||||||||||||||| |||||||| || |  ||  | | ||       |  | | ||| | || | |     |||       |  |   |   || |   | || |     |||| |    | | 
GGCCGCCGCGGCTCAGTGTCTGGACTGGGCTCCCGCGCGGCGTCGGGTGCGGGCCGCCTTCGCGCCCGTGCTCCCCACCCTCGACCACTGCCTTTTCAAGgttcgatgtgcaagtcgctccgtcctagcttgatttggtttcgta-cgctgtagcggaggatcagctgtcaaaattattttttgggaaatggt-cgaacgct-