1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGCTCTCGCCGTGTTTGGTGGTTGTTGCTCCGCGGTGGAGACGCTCGGATCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAGgtaattgaaatgttccctgctggttgttgcttgtgcacttgtgctgatttgctatcctactttgtggtaatataactggtaattgaaaagtcccctgttt...
species | Oryza sativa |
transcript | LOC_Os01g49310.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAG GCTGCCTCGCAAGTCGCAAGTAATAGCAAGCACCTCTATCGGATTTCATTCEST: gi|88324650|gb|CI568269.1|CI568269
genomic: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAGgtaattgaaa ... atggatgcagGCTGCCTCGCAAGTCGCAAGTAATAGCAAGCACCTCTATCGGATTTCATTC
EST: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAG GCTGCCTCGCAAGTCGCAAGTAATAGCAAGCACCTCTATCGGATTTCATTC
genomic: TCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAGgtaattgaaa ... atggatgcagGCTGCCTCGCAAGTCGCAAGTAATAGCAAGCACCTCTATCGGATTTCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCTCTCGCCGTGTTTGGTGGTTGTTGCTCCGCGGTGGAGACGCTCGGATCTGAATTTTGGCGGCGGGCGCGCGGCGAAGGAGGCGAGGGGTTTCTCAGgtaattgaaatgttccctgctggttgttgcttgtgcacttgtgctgatttgctatcctactttgtggtaatataactggtaattgaaaagtcccctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG