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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGGAGCGAGTACGGGAGCACGCTCGACGACGACCAGCGGTACGCCGACGCCGCCGAGGTGCTCGCGGCGGCCGCGGCCTCCGCCAACTTCCCCTCCGgtgcctccgattgctggtattttggctcctggccctacttaactcgcgttgaattgtctgtctgggattgcgaactgtgacgctagcggctctggaatgtggatctggtgaattttgttggaaataataatgcttgatctcatggacgccttgcctttctag

Basic information

species Oryza sativa
transcript LOC_Os01g49250.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g49250.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G073045_T02 (Zea mays), 5'ss of exon 1
GTGCGGAGCGAGTACGGGAGCACGCTCGACGACGACCAGCGGTACGCCGACGCCGCCGAGGTGCTCGCGGCGGCCGCGGCCTCCGCCAACTTCCCCTCCGgtgcctccgattgctggtattttggctcctggccctacttaactcgcgttgaattgtct-gtctgggattgcgaactgtgacgctagcggctctggaatgtggatctggtgaattttgttggaaataataatgcttgatctcatggacgccttgcctttctag
                |||||||||||||||| |||||||| ||||||||||| || ||||||||||| ||  ||||| |||||||||||||||||||||  |||||||||| ||||||           |   | | |    |   |  |||| | ||  || | |  |||||| || || ||||  | |   |  || | ||||| |  ||||  |  |||    | |||||                             
----------------GGAGCACGCTCGACGATGACCAGCGCTACGCCGACGCTGCTGAGGTGCTCGCCGCTTCCGCGTCCTCCGCCAACTTCCCCTCCGCCGCCTCCGATTACTGgtac----------gagaccatt----ttctgccgaatggcctcatccgtg--tgcgaattg-gatgctactgacctcgagatatagatctagcaaattgcgg-ggatccgacaatgc-----------------------------

upper sequence: LOC_Os01g49250.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA18G52990.1 (Glycine max), 5'ss of exon 1
GTGCGGAGCGAGTACGGGAGCACGCTCGACGACGACCAGCGGTACGCCGACGCCGCCGAGGTGCTCGCGGCGGCCGCGGCCTCCGCCAACTTCCCCTCCGgtgcctccgattgctggt--attttggctcctggccctacttaactcgcgttgaattgtctgtctgggattgcgaactgtgacgctagcggctctggaatgtggatctggtgaattttgttggaaataataatgcttgatctcatggacgccttgcctttctag
 |   ||||||||| || ||||| |||||||||||||||||  |||||||||||||||| |  ||| |            |  ||| ||| |||   |   | ||||||||| | |||  | ||   |||     |   | ||||     ||| |   | |   |     ||   | ||      | || ||   ||  | |  ||   ||||   ||| ||                                          
-TCAAGAGCGAGTATGGCAGCACTCTCGACGACGACCAGCGCCACGCCGACGCCGCCGAAGCTCTCTC------------CAACGCGAACCTCCGACC---TCCCTCCGATTACAGgttcacttcctctctctctctctcataaccactcttgcacctttttatt-----tgttgattgcatttttcgctgcctcggtttttttatgctgtga-cattgctg------------------------------------------

upper sequence: LOC_Os01g49250.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA02G09990.1 (Glycine max), 5'ss of exon 1
GTGCGGAGCGAGTACGGGAGCACGCTCGACGACGACCAGCGGTACGCCGACGCCGCCGAGGTGCTCGCGGCGGCCGCGGCCTCCGCCAACTTCCCCTCCGgtgcctccgattgctggtattttggctcctggccctacttaactcgcgttgaattgtctgtctgggattgcgaactgtgacgctagcggctctgga--atgtggatctggtgaattttgttggaaataataatgcttgatctcatggacgccttgcctttctag
 |   |||||||||||| ||||| || ||||||||||||||  | || ||||||||||| |  ||| |            |  ||||||| |||   |   | ||||||||| | |||    |  |||    | ||   |  ||| |    |             | | |||  || | |||  |  |  || | |  |  ||||| | |||  || ||                                             
-TCAAGAGCGAGTACGGAAGCACTCTGGACGACGACCAGCGCCATGCTGACGCCGCCGAAGCTCTCTC------------CAACGCCAACCTCCGACC---TCCCTCCGATTACAGgttcacttcctctct-ctctctctctctcacacacacacacacacgcacgctcgcgc-ctat-acgagattgtatccgaatgaattggattttgtgttttgtg---------------------------------------------