Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCATGCGTGGCTCCCTGGAGGTCCACGCGATTGGCAGACACGCCGCGTCGCCGTGCGCCCTGAGACTGAAAGCCCTCCCGGCATTGGACATGATGAGgtagacggcagatctccaggccctcgagcctctcgtccttgttcggttgttcctgcggttcctcgtttcttgctctcttctgtgtcagatcgctatgttg...

Basic information

species Oryza sativa
transcript LOC_Os01g48830.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g48830.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G077607_T05 (Zea mays), 5'ss of exon 1
TTTTCATGCGTGGCTCCCTGGAGGTCCACGCGATTGGCAGACACGCCGCGTCGCCGTGCGCCCTGAGACTGAAAGCCCTCCCGGCATTGGACATGATGAGgtagacggcagatctccaggccctcgagcctctcgtccttgttcggttgttcctgcggttcctcgtttcttgctctcttctgtgtcagatcgctatgttg----
|||| ||||||||  || | ||||||||| ||||| ||||| ||| |||  ||||| |  ||||||| || | || ||  |||||||||||||||||||||||| |||||||||||| | | |||    ||| | ||  |||||  ||| | |  | | |  ||      || |     |||   |||||||   |||      
TTTTGATGCGTGGTGCCGTCGAGGTCCACACGATTCGCAGAGACGTCGCCACGCCGAGTCCCCTGAGGCTCAGAGACCCTCCGGCATTGGACATGATGAGgtagccggcagatctccggcctctcacctctccc-tctctgttcacttggttcctccggttatcacgcggtggttctcgctg---cagatcgaagtgtaacatg