1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTGCTGGGGAAGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacctcctcgcctgtatctgtatatctctttcgctcgccaaagcttttaccttttctcgaccatgccgcacgcag
species | Oryza sativa |
transcript | LOC_Os01g48760.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88334302|gb|CI642547.1|CI642547
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88762854|gb|CI772410.1|CI772410
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88349798|gb|CI634333.1|CI634333
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88317589|gb|CI672171.1|CI672171
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTNGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88761445|gb|CI771001.1|CI771001
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCEST: gi|88587859|gb|CI705639.1|CI705639
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGC-AGAGGACGTGGAAGGCGGCGTCAGGCGAGCC
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88577442|gb|CI674029.1|CI674029
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88665244|gb|CI710078.1|CI710078
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88308803|gb|CI654086.1|CI654086
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88734582|gb|CI758090.1|CI758090
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|25799413|gb|CA755374.1|CA755374
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88210949|gb|CI212589.1|CI212589
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88580222|gb|CI692224.1|CI692224
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|86850381|gb|CI307610.1|CI307610
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCA-CCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88593295|gb|CI709458.1|CI709458
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88408609|gb|CI686112.1|CI686112
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|56157672|gb|C25211.2|C25211
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88290434|gb|CI665223.1|CI665223
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|87012916|gb|CI297143.1|CI297143
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88761851|gb|CI771407.1|CI771407
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCGEST: gi|88825494|gb|CI776059.1|CI776059
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
EST: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAG CCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
genomic: CCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacc ... ccgcacgcagCCGGTGATCTCGTACACGCAGAGGACGTGGAAGGCGGCGTCAGGCGAGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGCTGGGGAAGTGGCGCGGGGAAGGCGAGGGGAGCTTCCCCACCATCTCCCCCTTCCGCTACGGCGAGGAGCTCCTCTTCTCCCACCACCCCTCCAAGgtaaacgacctcctcgcctgtatctgtatatctctttcgctcgccaaagcttttaccttttctcgaccatgccgcacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC