1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGTACCAGCAGCAGCAGGGAATCATGGACTCGGAGCACTGGATCTCGAGCCTCGCCGCCGCCAAGCGGTTCTACGCGGCGCAGCTCGGTCACGTCGACGgtatgcggccatctcgacttttccctcgaatctttgtttggctttctgctgttgctgttgctgatttgtgatttgattcgttggattgggcgcgcag
species | Oryza sativa |
transcript | LOC_Os01g48190.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTCGCCGCCGCCAAGCGGTTCTACGCGGCGCAGCTCGGTCACGTCGACG ATATGGCGGGGATTGGAATGGAGGAGGTGGAGATGGAGATGGEST: gi|88694554|gb|CI738592.1|CI738592
genomic: CCTCGCCGCCGCCAAGCGGTTCTACGCGGCGCAGCTCGGTCACGTCGACGgtatgcggcc ... gggcgcgcagATATGGCGGGGATTGGAATGGAGGAGGTGGAGATGGAGATGG
EST: CCTCGCCGCCGCCAAGCGGTTCTACGCGGCGCAGCTCGGTCACGTCGACG ATATGGCGGGGATTGGAATGGAGGAGGTGGAGATGGAGATGGEST: gi|88588276|gb|CI706082.1|CI706082
genomic: CCTCGCCGCCGCCAAGCGGTTCTACGCGGCGCAGCTCGGTCACGTCGACGgtatgcggcc ... gggcgcgcagATATGGCGGGGATTGGAATGGAGGAGGTGGAGATGGAGATGG
EST: CCTCGCCGCCGCCAAGCGGTTCTACGCGGCGCAGCTCGGTCACGTCGACG ATATGGCGGGGATTGGAATGGAGGAGGTGGAGATGGAGATGGAGGATGATG
genomic: CCTCGCCGCCGCCAAGCGGTTCTACGCGGCGCAGCTCGGTCACGTCGACGgtatgcggcc ... gggcgcgcagATATGGCGGGGATTGGAATGGAGGAGGTGGAGATGGAGATGGAGGATGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTACCAGCAGCAGCAGGGAATCATGGACTCGGAGCACTGGATCTCGAGCCTCGCCGCCGCCAAGCGGTTCTACGCGGCGCAGCTCGGTCACGTCGACGgtatgcggccatctcgacttttccctcgaatctttgtttggctttctgctgttgctgttgctgatttgtgatttgattcgttggattgggcgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC